ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1224

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1224_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

1..177
DNA (177bp) protein (59aa)
id=4051593 bin=GWF2_Firmicute_51_9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Firmicute_51_9 organism_group=Firmicute
Tax=GWF2_Firmicutes_51_9_curated
PLM3-1_170_b2_sep16_scaffold_1224_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

269..523
DNA (255bp) protein (85aa)
transglycosylase-associated protein bin=bin3_NC10 species=Sphingobium xenophagum genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
transglycosylase-associated protein
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_1224_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1253..4849
DNA (3597bp) protein (1199aa)
Uncharacterized protein Tax=Azoarcus sp. KH32C RepID=H0Q1Y1_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3-1_170_b2_sep16_scaffold_1224_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4959..5204
DNA (246bp) protein (82aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1224_5
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5302..6303)
DNA (1002bp) protein (334aa)
UbiD family decarboxylase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CQG3_DESK7
UbiD family decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3-1_170_b2_sep16_scaffold_1224_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6936..8162
DNA (1227bp) protein (409aa)
Uncharacterized protein Tax=Halogranum salarium B-1 RepID=J3JHY5_9EURY
major facilitator superfamily MFS_1
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8143..9246)
DNA (1104bp) protein (368aa)
ABC transporter, ATP-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter, ATP-binding subunit, PltJ-like
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1224_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9249..10199)
DNA (951bp) protein (317aa)
ABC transporter, ATP-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter, ATP binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1224_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10262..11404)
DNA (1143bp) protein (381aa)
Secretion protein HlyD family protein bin=GWD2_Deltaproteobacteria_55_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
secretion protein HlyD
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1224_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11436..12308)
DNA (873bp) protein (291aa)
cation diffusion facilitator family transporter bin=GWD2_Deltaproteobacteria_55_8 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cation diffusion facilitator family transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1224_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12354..13553)
DNA (1200bp) protein (400aa)
Membrane-bound lytic murein transglycosylase bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
putative transglycosylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13565..13942
DNA (378bp) protein (126aa)
Putative uncharacterized protein bin=GWB2_Deltaproteobacteria_65_81 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_13
RLO_PLX_64_10, Bacteria

Not on your lists

comp(13955..14314)
DNA (360bp) protein (120aa)
Uncharacterized protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_1224_14
unknown

Not on your lists

14372..14545
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1224_15
RLO_PLX_64_10, Bacteria

Not on your lists

comp(14637..18608)
DNA (3972bp) protein (1324aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. WSM471 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_1224_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18755..19780)
DNA (1026bp) protein (342aa)
Ornithine cyclodeaminase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ocd2; Ornithine cyclodeaminase 2
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19868..20815
DNA (948bp) protein (316aa)
Fumarylacetoacetate (FAA) hydrolase family protein Tax=Oceanibaculum indicum P24 RepID=K2J5D5_9PROT
fumarylacetoacetate (FAA) hydrolase family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20887..21693)
DNA (807bp) protein (269aa)
ABC transporter permease bin=bin7_NC10_sister species=Pusillimonas noertemannii genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_19
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21657..22436)
DNA (780bp) protein (260aa)
binding-protein-dependent transport systems inner membrane component bin=bin7_NC10_sister species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22433..23209)
DNA (777bp) protein (259aa)
spermidine/putrescine import ATP-binding protein potA (EC:3.6.3.31); K02049 NitT/TauT family transport system ATP-binding protein bin=bin7_NC10_sister species=Actinoplanes sp. genus=Actinoplanes taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
spermidine/putrescine import ATP-binding protein potA (EC:3.6.3.31)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1224_21
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23341..23985)
DNA (645bp) protein (215aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component Tax=Desulfovibrio africanus PCS RepID=M5Q1U4_DESAF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 21 items

View Taxonomy