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PLM3_127_b2_sep16_scaffold_1476

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1476_1
unknown

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comp(2..328)
DNA (327bp) protein (109aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1476_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(377..1405)
DNA (1029bp) protein (343aa)
acetyltransferase bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase, ribosomal protein N-acetylase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1476_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1405..2103)
DNA (699bp) protein (233aa)
ubiG; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Putative methyltransferase protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1476_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2109..4295)
DNA (2187bp) protein (729aa)
putative histidine kinase (EC:2.7.13.3)
GAF sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1476_5
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(4495..5016)
DNA (522bp) protein (174aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin3_NC10 organism_group=NC10
membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_127_b2_sep16_scaffold_1476_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5151..5756
DNA (606bp) protein (202aa)
Response regulator receiver Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWA3_ALIDB
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADU98241.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
PLM3_127_b2_sep16_scaffold_1476_7
Escherichia fergusonii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5818..6633
DNA (816bp) protein (272aa)
RNA polymerase sigma factor Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LH07_THEPS
fliA; RNA polymerase flagellar operon sigma factor FliA
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia fergusonii.;"
PLM3_127_b2_sep16_scaffold_1476_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6642..8018)
DNA (1377bp) protein (459aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1476_9
unknown

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comp(8345..8698)
DNA (354bp) protein (118aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1476_10
unknown

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comp(8698..9165)
DNA (468bp) protein (156aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1476_11
unknown

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comp(9162..9929)
DNA (768bp) protein (256aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1476_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10030..10830
DNA (801bp) protein (267aa)
RNA-binding protein Tax=Limnohabitans sp. Rim28 RepID=UPI000308ED7A
rnp-1 like RNA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1476_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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11033..12922
DNA (1890bp) protein (630aa)
Putative phytochrome sensor protein Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IM22_METNO
putative phytochrome sensor protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1476_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13212..14090
DNA (879bp) protein (293aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1476_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14595..14807)
DNA (213bp) protein (71aa)
nicotinate phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1476_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14929..15240)
DNA (312bp) protein (104aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1476_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15595..15840
DNA (246bp) protein (82aa)
Transcriptional regulator, Crp/Fnr family bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1476_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15891..16931
DNA (1041bp) protein (347aa)
TrkA-N domain protein bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
trka-n domain protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1476_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17216..18100)
DNA (885bp) protein (295aa)
UspA domain protein bin=GWF2_Methylomirabilis_70_14 species=Natronolimnobius innermongolicus genus=Natronolimnobius taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Universal stress protein family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1476_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18378..20138)
DNA (1761bp) protein (587aa)
nadE; NAD synthetase (EC:6.3.1.5)
NAD+ synthase Tax=Nitrosococcus oceani RepID=Q3J9E1_NITOC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1476_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20160..21605)
DNA (1446bp) protein (482aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1476_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(21651..22079)
DNA (429bp) protein (143aa)
Protein archease bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1476_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22113..22790
DNA (678bp) protein (226aa)
Response regulator receiver domain protein (CheY-like) Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EX44_9PROT
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1476_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22790..24154
DNA (1365bp) protein (455aa)
Integral membrane sensor signal transduction histidine kinase Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJT7_SYNFM
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 24 items

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