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PLM3_127_b2_sep16_scaffold_1813

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1813_1
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..109)
DNA (108bp) protein (36aa)
Elongation factor Tu Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U4J9_ETHHY
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
PLM3_127_b2_sep16_scaffold_1813_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(136..2244)
DNA (2109bp) protein (703aa)
fusA-3; elongation factor G; K02355 elongation factor G bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
fusA-3; translation elongation factor G
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1813_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(2326..2793)
DNA (468bp) protein (156aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsG; 30S ribosomal protein S7
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2797..3177)
DNA (381bp) protein (127aa)
30S ribosomal protein S12 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1813_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3343..7593)
DNA (4251bp) protein (1417aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7731..11738)
DNA (4008bp) protein (1336aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoB; RNA polymerase subunit beta (EC:2.7.7.6)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1813_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(11862..12248)
DNA (387bp) protein (129aa)
50S ribosomal protein L7/L12 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L7/L12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1813_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12275..12799)
DNA (525bp) protein (175aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1813_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(12821..13531)
DNA (711bp) protein (237aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 bin=bin7_NC10_sister species=Bacillus sp. ZYK genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplA; 50S ribosomal protein L1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(13628..14050)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(14051..14599)
DNA (549bp) protein (183aa)
Transcription antitermination protein nusG bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nusG; component in transcription antitermination
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14596..14787)
DNA (192bp) protein (64aa)
Preprotein translocase, SecE subunit bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase, SecE subunit
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_trna_1
unknown

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comp(14837..14910)
DNA (74bp)
transferRNA Trp
PLM3_127_b2_sep16_scaffold_1813_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(14959..15108)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmG; 50S ribosomal protein L33
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1813_14
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15112..15273)
DNA (162bp) protein (54aa)
Elongation factor Tu Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZUU2_DESOH
elongation factor Tu
Translation elongation factor Tu {ECO:0000313|EMBL:EPR32470.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
Displaying 15 items

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