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PLM3_127_b2_sep16_scaffold_1363

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1363_1
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..185)
DNA (183bp) protein (61aa)
SSU ribosomal protein S18P alanine acetyltransferase (EC:2.3.1.-)
alanine acetyltransferase Tax=Methylotenera RepID=UPI00036FFA5F
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1363_2
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..856)
DNA (675bp) protein (225aa)
Peptidase M22 glycoprotease Tax=Methylovorus sp. (strain MP688) RepID=E4QLP6_METS6
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB {ECO:0000313|EMBL:GAO34165.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
peptidase m22 glycoprotease
PLM3_127_b2_sep16_scaffold_1363_3
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1042..2325
DNA (1284bp) protein (428aa)
ABC transporter substrate-binding protein Tax=Alcaligenes RepID=U1YE68_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ERI33750.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
putative ABC transporter, periplasmic protein
PLM3_127_b2_sep16_scaffold_1363_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2532..3503
DNA (972bp) protein (324aa)
Tartrate dehydrogenase Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=K9ZZ02_DEIPD
tartrate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1363_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3568..4845
DNA (1278bp) protein (426aa)
Tat (Twin-arginine translocation) pathway signal sequence domain protein Tax=uncultured marine bacterium 582 RepID=Q6SEX6_9BACT
extracellular ligand-binding receptor
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1363_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4870..5736
DNA (867bp) protein (289aa)
Inner-membrane translocator Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRZ0_VEREI
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1363_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5733..8267
DNA (2535bp) protein (845aa)
Branched-chain amino acid ABC transporter, ATP-binding/permease protein Tax=uncultured marine bacterium 582 RepID=Q6SEX8_9BACT
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1363_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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8551..9327
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR Tax=Burkholderia sp. RPE64 RepID=R4WMV3_9BURK
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1363_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9679..10614
DNA (936bp) protein (312aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2JRU9_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1363_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10825..11751
DNA (927bp) protein (309aa)
Uncharacterized protein Tax=Herbaspirillum sp. YR522 RepID=J2W9F8_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1363_11
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12293..14068
DNA (1776bp) protein (592aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GMU1_THISH
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=GWA2_Gallionellales_60_18_curated
PLM3_127_b2_sep16_scaffold_1363_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14075..15583)
DNA (1509bp) protein (503aa)
hypothetical protein Tax=Methylobacterium sp. 77 RepID=UPI0003659ECD
glpD; glycerol-3-phosphate dehydrogenase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1363_13
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15614..16129)
DNA (516bp) protein (172aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI000307EB9F
Appr-1-p processing domain protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:AFZ29477.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
PLM3_127_b2_sep16_scaffold_1363_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16219..16944
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=Burkholderia gladioli (strain BSR3) RepID=F2LEM0_BURGS
ompR; transcriptional regulatory protein ompR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1363_15
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16961..18289
DNA (1329bp) protein (443aa)
Signal transduction histidine kinase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLX0_AZOSU
signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1363_16
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18585..19124)
DNA (540bp) protein (180aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
2'-5' RNA ligase Tax=Thauera sp. 63 RepID=N6YJN3_9RHOO
2'-5' RNA ligase
PLM3_127_b2_sep16_scaffold_1363_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19121..19618)
DNA (498bp) protein (166aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) (MECDP-synthase) (Modular protein) Tax=mine drainage metagenome RepID=E6QHF1_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1363_18
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19862..20551)
DNA (690bp) protein (230aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6B4Q6_9PROT
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PLM3_127_b2_sep16_scaffold_1363_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20720..21055
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6B096_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34152.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_1363_20
CG_Omnitr_06, Omnitrophica, Bacteria

Not on your lists

21068..22633
DNA (1566bp) protein (522aa)
hypothetical protein Tax=Thiomonas sp. FB-6 RepID=UPI00036C34B1
iron permease FTR1 family protein
Tax=CG_Omnitr_06
PLM3_127_b2_sep16_scaffold_1363_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22986..26402
DNA (3417bp) protein (1139aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Transcription-repair-coupling factor Tax=Sulfuricella denitrificans skB26 RepID=S6B477_9PROT
mfd; transcription-repair coupling factor
PLM3_127_b2_sep16_scaffold_1363_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26424..26747)
DNA (324bp) protein (108aa)
ferredoxin Tax=Methylohalobius crimeensis RepID=UPI0003B5CFCB
rieske 2Fe-2S domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1363_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26887..27462)
DNA (576bp) protein (192aa)
Scaffold protein Nfu/NifU Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GL41_NITSI
Scaffold protein Nfu/NifU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1363_24
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27467..27943)
DNA (477bp) protein (159aa)
SUF system FeS assembly protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB64_NITMU
SUF system FeS assembly protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1363_25
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27954..29216)
DNA (1263bp) protein (421aa)
Cysteine desulfurase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB65_NITMU
SufS subfamily cysteine desulfurase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1363_26
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29219..30235)
DNA (1017bp) protein (339aa)
Iron-sulfur cluster assembly protein SufD Tax=Nitrosospira sp. APG3 RepID=M5DFJ5_9PROT
FeS assembly protein SufD
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Displaying 26 items

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