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PLM3_127_b2_sep16_scaffold_60

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_60_1
unknown

Not on your lists

280..1482
DNA (1203bp) protein (401aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_2
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1492..4317
DNA (2826bp) protein (942aa)
Uncharacterized protein Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YDB8_THIV6
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM3_127_b2_sep16_scaffold_60_3
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..5714
DNA (987bp) protein (329aa)
Uncharacterized protein Tax=Alicycliphilus denitrificans RepID=E8TWZ2_ALIDB
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_60_4
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5978..6640
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=Microvirga sp. WSM3557 RepID=I4YML9_9RHIZ
conserved exported hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3_127_b2_sep16_scaffold_60_5
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6731..6919
DNA (189bp) protein (63aa)
ABC transporter, ATP-binding protein Tax=Edwardsiella RepID=C5BEG5_EDWI9
Putative ATPase component of ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_60_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6916..7305)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K5K0_SACES
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_60_7
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7348..7497)
DNA (150bp) protein (50aa)
Transcriptional regulatory protein, MerR family Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIZ2_THIDA
MerR family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_60_8
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8176..8673
DNA (498bp) protein (166aa)
hypothetical protein Tax=Hyphomicrobium zavarzinii RepID=UPI0003793E31
Uncharacterized protein {ECO:0000313|EMBL:EWS58063.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_60_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9077..11539
DNA (2463bp) protein (821aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI000372D31E
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_60_10
unknown

Not on your lists

comp(11896..12291)
DNA (396bp) protein (132aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_11
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12374..13411
DNA (1038bp) protein (346aa)
aldo/keto reductase (EC:1.1.1.91)
NADP-dependent oxidoreductase Tax=cyanobacterium PCC 7702 RepID=UPI000373FF42
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_60_12
unknown

Not on your lists

13408..13560
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13897..14505
DNA (609bp) protein (203aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002FE4A6B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF48946.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
PLM3_127_b2_sep16_scaffold_60_14
unknown

Not on your lists

comp(14466..14669)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_15
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14737..15414)
DNA (678bp) protein (226aa)
ChaC-like protein Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X7Y0_9BURK
ChaC-like protein {ECO:0000313|EMBL:EFF77076.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
Cation transport protein chaC
PLM3_127_b2_sep16_scaffold_60_16
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15446..16507)
DNA (1062bp) protein (354aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] bin=CNBR_ACIDO species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA polymerase IV
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_60_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16647..16979
DNA (333bp) protein (111aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002F44029
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:AIF47565.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
PLM3_127_b2_sep16_scaffold_60_18
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16976..18049
DNA (1074bp) protein (358aa)
glutathione S-transferase Tax=Pseudomonas pyrrocinia RepID=UPI00037DE619
KY49.ctg7180000000022_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP16241.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_60_19
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

18061..18390
DNA (330bp) protein (110aa)
hypothetical protein Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037BC4E5
hypothetical protein
Tax=GWC2_Chloroflexi_49_37_curated
PLM3_127_b2_sep16_scaffold_60_20
unknown

Not on your lists

comp(18464..19045)
DNA (582bp) protein (194aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_21
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19149..21293
DNA (2145bp) protein (715aa)
Outer membrane TPR domain protein Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A0T0_PELCD
pgaA; outer membrane TPR domain-containing protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
PLM3_127_b2_sep16_scaffold_60_22
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21295..23271
DNA (1977bp) protein (659aa)
Hemin storage protein Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T1E1_JANMA
Uncharacterized protein {ECO:0000313|EMBL:KIH77980.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_60_23
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23271..24539
DNA (1269bp) protein (423aa)
Glycosyl transferase family 2 Tax=Methylomonas methanica (strain MC09) RepID=G0A376_METMM
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEF99008.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
PLM3_127_b2_sep16_scaffold_60_24
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24536..25006
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Methylotenera sp. (strain 301) RepID=D7DK49_METS0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI28434.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
PLM3_127_b2_sep16_scaffold_60_25
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25214..26632
DNA (1419bp) protein (473aa)
hypothetical protein Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000346CAB8
transcriptional regulator
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_60_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26629..27171
DNA (543bp) protein (181aa)
methylated-DNA-[]-cysteine S-methyltransferase family protein (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase Tax=Marinobacter nanhaiticus D15-8W RepID=N6WPP0_9ALTE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_60_27
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27604..28500
DNA (897bp) protein (299aa)
beta-hydroxyacid dehydrogenase (EC:1.1.1.-)
Putative beta-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CAP42601.1}; EC=1.1.1.- {ECO:0000313|EMBL:CAP42601.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Putative beta-hydroxyacid dehydrogenase Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ILM3_BORPD
PLM3_127_b2_sep16_scaffold_60_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28514..29905
DNA (1392bp) protein (464aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002E0C0BF
Uncharacterized protein {ECO:0000313|EMBL:KGT78538.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_60_29
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30141..31097
DNA (957bp) protein (319aa)
branched-chain amino acid ABC transporter permease Tax=Chelatococcus sp. GW1 RepID=UPI0002E57B87
branched-chain amino acid ABC transporter permease
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:CAP41993.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
PLM3_127_b2_sep16_scaffold_60_30
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31094..32890
DNA (1797bp) protein (599aa)
branched-chain amino acid ABC transporter Tax=Bradyrhizobium japonicum RepID=UPI00037C425D
branched-chain amino acid ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:BAL11653.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Displaying items 1-30 of 80 in total

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