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PLM3_127_b2_sep16_scaffold_60

Search features with annotation key words

Displaying items 31-60 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_60_31
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32883..33590
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQD3_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:EJZ30914.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
livF; leucine/isoleucine/valine transporter ATP-binding subunit
PLM3_127_b2_sep16_scaffold_60_32
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33636..34883
DNA (1248bp) protein (416aa)
branched-chain amino acid ABC transporter substrate-binding protein Tax=Chelatococcus sp. GW1 RepID=UPI00036256E6
putative branched-chain amino acid ABC transporter
Putative branched-chain amino acid ABC transporter {ECO:0000313|EMBL:BAL75204.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
PLM3_127_b2_sep16_scaffold_60_33
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35165..35554
DNA (390bp) protein (130aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002E62E43
putative 4-carboxymuconolactone decarboxylase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
PLM3_127_b2_sep16_scaffold_60_34
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35584..36381
DNA (798bp) protein (266aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002ECB449
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:EKE73630.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
beta-lactamase domain-containing protein
PLM3_127_b2_sep16_scaffold_60_35
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36610..37575)
DNA (966bp) protein (322aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding {ECO:0000313|EMBL:EGO96892.1}; EC=1.1.1.95 {ECO:0000313|EMBL:EGO96892.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000364C72C
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase protein
PLM3_127_b2_sep16_scaffold_60_36
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37784..38647
DNA (864bp) protein (288aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000313|EMBL:KJB90587.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Shikimate dehydrogenase Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUC0_METNO
shikimate 5-dehydrogenase
PLM3_127_b2_sep16_scaffold_60_37
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38946..39188
DNA (243bp) protein (81aa)
Transcriptional regulator, AbrB family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6B7_GEOUR
AbrB family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_60_38
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39188..39610
DNA (423bp) protein (141aa)
PilT protein domain protein Tax=Holophaga foetida DSM 6591 RepID=H1NYU9_9BACT
twitching mobility protein PilT
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_60_39
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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39671..40420
DNA (750bp) protein (250aa)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) Tax=uncultured Chloroflexi bacterium HF4000_28F02 RepID=E0XW94_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:ETW93491.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
cyclopentanol dehydrogenase
PLM3_127_b2_sep16_scaffold_60_40
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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40461..41315
DNA (855bp) protein (285aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TS90_9PROT
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_60_41
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41366..42535
DNA (1170bp) protein (390aa)
formyl-CoA transferase (EC:2.8.3.16)
Putative uncharacterized protein Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QR04_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06371.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
PLM3_127_b2_sep16_scaffold_60_42
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42558..43340
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKG0_TISMK
caiD; enoyl-CoA hydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_60_43
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43788..44150
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=gamma proteobacterium HTCC5015 RepID=B5JUE2_9GAMM
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_60_44
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44528..45238)
DNA (711bp) protein (237aa)
Transcriptional regulator, HxlR family Tax=Caenispirillum salinarum AK4 RepID=K9H272_9PROT
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EKV31632.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
HxlR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_60_45
unknown

Not on your lists

45361..45933
DNA (573bp) protein (191aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_46
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46180..47217)
DNA (1038bp) protein (346aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI0003746E2C
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_60_47
unknown

Not on your lists

comp(47494..47637)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_60_48
Leptospirillum sp. Group II '5-way CG', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(47719..48471)
DNA (753bp) protein (251aa)
type II site-specific deoxyribonuclease (EC:3.1.21.4) bin=THIO_MID species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_MID organism_group=Betaproteobacteria
type II site-specific deoxyribonuclease (EC:3.1.21.4)
Type II restriction endonuclease {ECO:0000313|EMBL:EDZ39052.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group II '5-way CG'.;"
PLM3_127_b2_sep16_scaffold_60_49
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48468..49478)
DNA (1011bp) protein (337aa)
DNA methylase N-4/N-6 domain-containing protein bin=THIO_MID species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DNA methylase N-4/N-6 domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PLM3_127_b2_sep16_scaffold_60_50
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49763..50470)
DNA (708bp) protein (236aa)
ABC transporter related Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKP3_SYNFM
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_60_51
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50476..51228)
DNA (753bp) protein (251aa)
ABC transporter related Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKP4_SYNFM
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_60_52
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51225..52280)
DNA (1056bp) protein (352aa)
Inner-membrane translocator bin=GWC2_Syntrophus__56_31 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
amino acid/amide ABC transporter membrane protein 2, HAAT family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_60_53
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52287..53174)
DNA (888bp) protein (296aa)
Inner-membrane translocator bin=GWC2_Syntrophus__56_31 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
inner-membrane translocator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_60_54
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53244..54548)
DNA (1305bp) protein (435aa)
Extracellular ligand-binding receptor Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKP5_SYNFM
extracellular ligand-binding receptor
Tax=CG_Rhodocyc_01
PLM3_127_b2_sep16_scaffold_60_55
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54811..57780)
DNA (2970bp) protein (990aa)
putA; bifunctional protein puta [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate] (EC:1.5.99.8 1.5.1.12)
Probable bifunctional protein puta [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate] Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UBE4_XANAP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_60_56

Not on your lists

58087..58653
DNA (567bp) protein (189aa)
OsmC-like protein Tax=uncultured bacterium F42-01 RepID=I3VIK5_9BACT
OsmC-like protein {ECO:0000313|EMBL:AFK79211.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium F42-01.;"
OsmC family protein
PLM3_127_b2_sep16_scaffold_60_57

Not on your lists

58685..59956
DNA (1272bp) protein (424aa)
Putative monooxygenase Tax=uncultured bacterium F42-01 RepID=I3VIK6_9BACT
Putative monooxygenase {ECO:0000313|EMBL:AFK79212.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium F42-01.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
PLM3_127_b2_sep16_scaffold_60_58
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60234..61037
DNA (804bp) protein (268aa)
Putative methyltransferase Tax=Rhizobium grahamii CCGE 502 RepID=S3H6Y2_9RHIZ
Putative methyltransferase {ECO:0000313|EMBL:EPE94444.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
type 11 methyltransferase
PLM3_127_b2_sep16_scaffold_60_59
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61180..61860
DNA (681bp) protein (227aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002FE4A6B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF48946.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
PLM3_127_b2_sep16_scaffold_60_60
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62043..63077)
DNA (1035bp) protein (345aa)
Aldo/keto reductase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MRZ6_CORCM
yajO; aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:AFE10705.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
Displaying items 31-60 of 80 in total

View Taxonomy