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PLM3_127_b2_sep16_scaffold_904

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_904_1
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

245..439
DNA (195bp) protein (65aa)
Integron integrase Tax=Dechloromonas aromatica (strain RCB) RepID=Q47AH5_DECAR
integron integrase
Tax=BJP_IG2103_Dechloromonas_60_92
PLM3_127_b2_sep16_scaffold_904_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

535..2400
DNA (1866bp) protein (622aa)
Helicase c2 Tax=Sulfuricella denitrificans skB26 RepID=S6AL77_9PROT
helicase c2
Helicase c2 {ECO:0000313|EMBL:BAN35419.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_904_3
Pseudomonas sp. HMP271, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2410..2802)
DNA (393bp) protein (131aa)
Putative uncharacterized protein Tax=Pseudomonas fulva (strain 12-X) RepID=F6A9E8_PSEF1
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KGK83887.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HMP271.;"
PLM3_127_b2_sep16_scaffold_904_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2808..4151)
DNA (1344bp) protein (448aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000255|HAMAP-Rule:MF_01865}; Short=S12 MTTase {ECO:0000255|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000255|HAMAP-Rule:MF_01865};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000255|HAMAP-Rule:MF_01865}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Ribosomal protein S12 methylthiotransferase RimO Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RIMO_NITMU
hypothetical protein
PLM3_127_b2_sep16_scaffold_904_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4223..4837)
DNA (615bp) protein (205aa)
Polyhydroxyalkonate synthesis repressor, PhaR Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T799_BURSG
polyhydroxyalkonate synthesis repressor PhaR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_904_6
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5092..5625
DNA (534bp) protein (178aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI00037E10A7
Phasin {ECO:0000313|EMBL:KJV33470.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
phasin family protein
PLM3_127_b2_sep16_scaffold_904_7

Not on your lists

comp(5967..6710)
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Uncharacterized protein Tax=uncultured bacterium RepID=K2FI89_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE17554.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM3_127_b2_sep16_scaffold_904_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6763..8493)
DNA (1731bp) protein (577aa)
Poly-beta-hydroxybutyrate polymerase Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P1L8_AROAE
poly(R)-hydroxyalkanoic acid synthase, class I
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_904_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8596..9372)
DNA (777bp) protein (259aa)
Zinc/iron permease Tax=Methylovorus sp. (strain MP688) RepID=E4QIL8_METS6
zinc/iron permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_904_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9432..10172)
DNA (741bp) protein (247aa)
Putative uncharacterized protein Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NVZ9_CHRVO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_904_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10165..11046)
DNA (882bp) protein (294aa)
Pseudouridine synthase Tax=Thauera sp. 63 RepID=N6XE14_9RHOO
RluA family pseudouridine synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_904_12
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11138..11908
DNA (771bp) protein (257aa)
Outer membrane protein assembly factor BamD Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM95_ACCPU
outer membrane assembly lipoprotein YfiO
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
PLM3_127_b2_sep16_scaffold_904_13
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12330..13418
DNA (1089bp) protein (363aa)
ISRSO5-transposase protein Tax=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) RepID=Q5GY02_XANOR
endonuclease DDE
ISRSO5-transposase protein {ECO:0000313|EMBL:AAW76419.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85).;"
PLM3_127_b2_sep16_scaffold_904_14
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13432..13743)
DNA (312bp) protein (104aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6Q1_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_904_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13721..13954)
DNA (234bp) protein (78aa)
Mercury transport periplasmic protein Tax=Neisseria mucosa C102 RepID=E5UJN7_NEIMU
mercuric ion binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_904_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14312..16285)
DNA (1974bp) protein (658aa)
Acetoacetyl-CoA synthetase Tax=Oceanibaculum indicum P24 RepID=K2JK04_9PROT
acetoacetyl-CoA synthetase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_904_17
unknown

Not on your lists

16370..16507
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_904_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16534..18036)
DNA (1503bp) protein (501aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase Tax=Nitrosomonas sp. AL212 RepID=F9ZEE9_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_904_19
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18137..19288)
DNA (1152bp) protein (384aa)
Peptide chain release factor 2 Tax=Nitrosospira sp. APG3 RepID=M5DGC0_9PROT
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
peptide chain release factor 2
PLM3_127_b2_sep16_scaffold_904_20
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19319..19822)
DNA (504bp) protein (168aa)
MgtC/SapB transporter Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GFZ3_NITSI
MgtC/SapB transporter
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_904_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19833..21542)
DNA (1710bp) protein (570aa)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ Tax=Nitrosospira sp. APG3 RepID=M5DGH7_9PROT
Single-stranded DNA exonuclease {ECO:0000313|EMBL:KIO50252.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PLM3_127_b2_sep16_scaffold_904_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21539..22633)
DNA (1095bp) protein (365aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6B6_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_904_23
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22685..22966
DNA (282bp) protein (94aa)
Lipoprotein releasing system, transmembrane protein, LolC/E family Tax=Methylovorus sp. (strain MP688) RepID=E4QJR5_METS6
lolE; LolC/E family lipoprotein releasing system transmembrane protein
Tax=CG_Beta_01
Displaying 23 items

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