ggKbase home page

PLM3_127_b2_sep16_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3_1
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(2..307)
DNA (306bp) protein (102aa)
Transcriptional activator domain protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ88_9CHLR
Tax=RBG_16_Chloroflexi_58_14_curated
PLM3_127_b2_sep16_scaffold_3_2
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

590..2206
DNA (1617bp) protein (539aa)
Protein serine phosphatase with GAF(S) sensor(S) Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ90_9CHLR
GAF sensor-containing protein serine phosphatase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3_127_b2_sep16_scaffold_3_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

2203..2565
DNA (363bp) protein (121aa)
Anti-sigma factor antagonist Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ91_9CHLR
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
anti-sigma-factor antagonist
PLM3_127_b2_sep16_scaffold_3_4
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

2587..2946
DNA (360bp) protein (120aa)
Anti-sigma-factor antagonist Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ92_9CHLR
spoIIAA; anti-sigma f factor antagonist
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3_127_b2_sep16_scaffold_3_5
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

2964..3443
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ93_9CHLR
Tax=RBG_16_Chloroflexi_57_11_curated
PLM3_127_b2_sep16_scaffold_3_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

3386..3745
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ93_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH81883.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
PLM3_127_b2_sep16_scaffold_3_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3749..5485)
DNA (1737bp) protein (579aa)
Uncharacterized protein Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A7Y2_NATTJ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3_127_b2_sep16_scaffold_3_8
unknown

Not on your lists

6127..6498
DNA (372bp) protein (124aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3_9
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

6547..7302
DNA (756bp) protein (252aa)
hypothetical protein Tax=Streptomyces sp. Wigar10 RepID=UPI000378F8D9
Uncharacterized protein {ECO:0000313|EMBL:KIJ71443.1}; Flags: Fragment;; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
PLM3_127_b2_sep16_scaffold_3_10
Arthrobacter siccitolerans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7145..9457)
DNA (2313bp) protein (771aa)
hypothetical protein Tax=Humibacter albus RepID=UPI0003B3D22D
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein {ECO:0000313|EMBL:CCQ46005.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter siccitolerans.;"
phosphoenolpyruvate synthase
PLM3_127_b2_sep16_scaffold_3_11
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9450..10310)
DNA (861bp) protein (287aa)
Transcriptional regulator, TetR family Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9YZQ8_9NEIS
TetR-family transcriptional regulator {ECO:0000313|EMBL:EWM11987.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
TetR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_3_12
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10389..10745
DNA (357bp) protein (119aa)
hypothetical protein Tax=Nocardiopsis lucentensis RepID=UPI00034949A5
Uncharacterized protein {ECO:0000313|EMBL:ETK32972.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_3_13
Mycobacterium cosmeticum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11002..12936)
DNA (1935bp) protein (645aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036B301A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDO07169.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium cosmeticum.;"
ABC transporter
PLM3_127_b2_sep16_scaffold_3_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12929..14785)
DNA (1857bp) protein (619aa)
ABC transporter related protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBS6_CONWI
ABC transporter
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_127_b2_sep16_scaffold_3_15

Not on your lists

14958..15842
DNA (885bp) protein (295aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00038147DC
Putative coenzyme F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase {ECO:0000313|EMBL:AHE14688.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
oxidoreductase
PLM3_127_b2_sep16_scaffold_3_16
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15909..17237)
DNA (1329bp) protein (443aa)
Putative gntR-family transcriptional regulator Tax=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) RepID=Q9AKA2_STRCO
GntR family transcriptional regulator {ECO:0000313|EMBL:KDS86254.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
SC10A9.02c; GntR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_3_17
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

17283..17942
DNA (660bp) protein (220aa)
Flavin-nucleotide-binding protein {ECO:0000313|EMBL:KIE11219.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
All4737 protein bin=GWC2_Methylomirabilis_70_16 species=Anabaena cylindrica genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
flavin-nucleotide-binding protein
PLM3_127_b2_sep16_scaffold_3_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17923..19410)
DNA (1488bp) protein (496aa)
Amino acid permease-associated region Tax=Klebsiella variicola (strain At-22) RepID=D3RCC0_KLEVT
amino acid permease-associated protein
Amino acid permease-associated protein {ECO:0000313|EMBL:KGE67186.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
PLM3_127_b2_sep16_scaffold_3_19
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(19579..20070)
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZX52_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN00904.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
PLM3_127_b2_sep16_scaffold_3_20
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20244..20516
DNA (273bp) protein (91aa)
hypothetical protein Tax=Curtobacterium flaccumfaciens RepID=UPI00036A6F62
Transglycosylase {ECO:0000313|EMBL:EYT65887.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_3_21
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20731..21687)
DNA (957bp) protein (319aa)
serine/threonine protein kinase Tax=Frankia sp. BCU110501 RepID=UPI0003632F49
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACZ84454.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_127_b2_sep16_scaffold_3_22
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21877..23922)
DNA (2046bp) protein (682aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
ATP-dependent zinc metalloprotease FtsH Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B6D0_FRADG
PLM3_127_b2_sep16_scaffold_3_23
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(24001..24552)
DNA (552bp) protein (184aa)
dTDP-4-dehydrorhamnose 3,5-epimerase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I971_CALAS
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:BAM01809.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_127_b2_sep16_scaffold_3_24
unknown

Not on your lists

24821..25291
DNA (471bp) protein (157aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3_25
unknown

Not on your lists

comp(25251..25631)
DNA (381bp) protein (127aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3_26
R_Melainabacteria_34_12, Melainabacteria, Bacteria

Not on your lists

comp(25754..26152)
DNA (399bp) protein (133aa)
Two component transcriptional regulator, winged helix family bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
response regulator receiver protein CheY-like
Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
PLM3_127_b2_sep16_scaffold_3_27
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(26149..28545)
DNA (2397bp) protein (799aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase Tax=Oscillochloris trichoides DG-6 RepID=E1IA63_9CHLR
PLM3_127_b2_sep16_scaffold_3_28
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(28548..29762)
DNA (1215bp) protein (405aa)
Metal dependent phosphohydrolase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F7Z4_CONWI
metal dependent phosphohydrolase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_3_29
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(30050..30667)
DNA (618bp) protein (206aa)
Uracil phosphoribosyltransferase Tax=Chthonomonas calidirosea T49 RepID=S0EY16_9BACT
uracil phosphoribosyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_3_30
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(30689..31285)
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEE2_THET1
hypothetical protein
Tax=RBG_16_RIF_CHLX_69_14_curated
Displaying items 1-30 of 220 in total

View Taxonomy