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PLM3_127_b2_sep16_scaffold_200

Search features with annotation key words

Displaying items 31-51 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_200_31
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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32476..33894
DNA (1419bp) protein (473aa)
DNA repair protein radA Tax=Thermobifida fusca (strain YX) RepID=Q47LC8_THEFY
DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
PLM3_127_b2_sep16_scaffold_200_32
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33891..34967
DNA (1077bp) protein (359aa)
DNA integrity scanning protein DisA Tax=Actinopolymorpha alba RepID=UPI00036C8927
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
DNA integrity scanning protein DisA
PLM3_127_b2_sep16_scaffold_200_33
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

35039..35575
DNA (537bp) protein (179aa)
CarD-like transcriptional regulator Tax=Mycobacterium rhodesiae (strain NBB3) RepID=G8RT01_MYCRN
CarD-like transcriptional regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_200_34
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35654..36376
DNA (723bp) protein (241aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F4T4_DESDL
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PLM3_127_b2_sep16_scaffold_200_35
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36606..37130
DNA (525bp) protein (175aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Bifunctional enzyme IspD/IspF Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDN5_9FIRM
PLM3_127_b2_sep16_scaffold_200_36
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37212..38618
DNA (1407bp) protein (469aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Cysteine--tRNA ligase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RNB3_ALLVD
PLM3_127_b2_sep16_scaffold_200_37
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38600..39799
DNA (1200bp) protein (400aa)
RNA methyltransferase, TrmH family, group 3 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLE8_THEM7
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ADU52390.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM3_127_b2_sep16_scaffold_200_trna_1
unknown

Not on your lists

39849..39921
DNA (73bp)
transferRNA Thr
PLM3_127_b2_sep16_scaffold_200_38
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40089..40328)
DNA (240bp) protein (80aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI0002E01E70
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW00670.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM3_127_b2_sep16_scaffold_200_39
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(40346..40543)
DNA (198bp) protein (66aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI0003756E62
hypothetical protein
YcfA family protein {ECO:0000313|EMBL:AFZ45297.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="Halothece sp. (strain PCC 7418) (Synechococcus sp. (strain PCC 7418)).;"
PLM3_127_b2_sep16_scaffold_200_40
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40676..41524
DNA (849bp) protein (283aa)
Uncharacterized protein Tax=Eimeria maxima RepID=U6M0Q2_EIMMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFJ11721.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
PLM3_127_b2_sep16_scaffold_200_41
unknown

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41494..42123
DNA (630bp) protein (210aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_200_42
unknown

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comp(42289..42501)
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_200_43
unknown

Not on your lists

42637..42855
DNA (219bp) protein (73aa)
hypothetical protein
PLM3_127_b2_sep16_scaffold_200_44
unknown

Not on your lists

comp(44079..44195)
DNA (117bp) protein (39aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_200_45

Not on your lists

44395..45528
DNA (1134bp) protein (378aa)
Transposase, IS4 family Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1X5_DESRM
Uncharacterized protein {ECO:0000313|EMBL:KKM60683.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase, IS4 family protein
PLM3_127_b2_sep16_scaffold_200_46
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(46382..47167)
DNA (786bp) protein (262aa)
NAD-dependent epimerase/dehydratase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THZ1_9CHLR
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EFH90961.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_200_47
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47271..47927
DNA (657bp) protein (219aa)
RNA polymerase sigma 70 Tax=Rhodococcus opacus RepID=UPI00029CC2F1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHK28464.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
PLM3_127_b2_sep16_scaffold_200_48
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47879..48160
DNA (282bp) protein (94aa)
hypothetical protein, partial Tax=Nocardiopsis halotolerans RepID=UPI00036D9EB9
RNA polymerase, sigma-24 subunit, ecf subfamily protein
RNA polymerase, sigma-24 subunit, ecf subfamily protein {ECO:0000313|EMBL:AEB45347.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM3_127_b2_sep16_scaffold_200_49
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

48594..49400
DNA (807bp) protein (269aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036BE406
Methyltransferase {ECO:0000313|EMBL:EFH30593.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
methylase involved in ubiquinone/menaquinone biosynthesis
PLM3_127_b2_sep16_scaffold_200_50
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

50005..50271
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Gordonia rhizosphera NBRC 16068 RepID=K6V0J6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAB89368.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
Displaying items 31-51 of 51 in total

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