ggKbase home page

PLM3_127_b2_sep16_scaffold_408

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_408_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(16..294)
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3D0_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50410.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_127_b2_sep16_scaffold_408_2
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(297..839)
DNA (543bp) protein (181aa)
Na(+)/H(+) antiporter NhaA Tax=Streptomyces ghanaensis ATCC 14672 RepID=D5ZYC9_9ACTO
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
cyclic nucleotide-binding protein
PLM3_127_b2_sep16_scaffold_408_3
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

878..1636
DNA (759bp) protein (253aa)
Phenol hydroxylase, putative Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FV17_PELBH
Phenol hydroxylase, putative {ECO:0000313|EMBL:EAU47914.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_408_4
Oryza glumipatula, Oryza, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

comp(1652..2470)
DNA (819bp) protein (273aa)
Os08g0364900 protein Tax=Oryza sativa subsp. japonica RepID=Q0J657_ORYSJ
Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM08G13300.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza.;" source="Oryza glumipatula.;"
pirin domain-containing protein
PLM3_127_b2_sep16_scaffold_408_5
unknown

Not on your lists

comp(2521..2709)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_408_6
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2808..3500
DNA (693bp) protein (231aa)
TetR family transcriptional regulator Tax=Streptomyces bottropensis ATCC 25435 RepID=M3EUX8_9ACTO
TetR family transcriptional regulator {ECO:0000313|EMBL:EMF52953.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
TetR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_408_7
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3705..4115)
DNA (411bp) protein (137aa)
Transposase Tax=Streptomyces bottropensis ATCC 25435 RepID=M3FU37_9ACTO
Transposase {ECO:0000313|EMBL:KIE36144.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
transposase IS4 family protein
PLM3_127_b2_sep16_scaffold_408_8
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8902..9051
DNA (150bp) protein (50aa)
Putative uncharacterized protein Tax=Streptomyces sp. Mg1 RepID=B4V365_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EDX22402.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_408_16S_1
unknown

Not on your lists

comp(8914..10435)
DNA (1522bp)
16S ribosomal RNA (16S rRNA)
PLM3_127_b2_sep16_scaffold_408_9
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(11230..12498)
DNA (1269bp) protein (423aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
tyrosyl-tRNA synthetase Tax=Frankia sp. Iso899 RepID=UPI0003B6C0EA
PLM3_127_b2_sep16_scaffold_408_10
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(12663..13883)
DNA (1221bp) protein (407aa)
Methyltransferase small bin=GWF1_Spirochaetes_60_12 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
methyltransferase small
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3_127_b2_sep16_scaffold_408_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14176..16710
DNA (2535bp) protein (845aa)
penicillin-binding protein 1A (EC:2.4.1.129)
Putative Membrane carboxypeptidase (Penicillin-binding protein) Tax=Candidatus Microthrix parvicella RN1 RepID=R4YZ67_9ACTN
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_408_12
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16810..17457)
DNA (648bp) protein (216aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI000364753F
DNA-3-methyladenine glycosylase
PLM3_127_b2_sep16_scaffold_408_13
Streptomyces glaucescens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17454..19217)
DNA (1764bp) protein (588aa)
phosphoesterase Tax=Saccharomonospora halophila RepID=UPI00036A9E62
PHP domain-containing protein
PHP domain-containing protein {ECO:0000313|EMBL:AIR96599.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces glaucescens.;"
PLM3_127_b2_sep16_scaffold_408_14
unknown

Not on your lists

comp(19217..19699)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_408_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(19767..20702)
DNA (936bp) protein (312aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase, catabolic Tax=Frankia sp. (strain CcI3) RepID=Q2J864_FRASC
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_408_16
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20699..21094)
DNA (396bp) protein (132aa)
Response regulator receiver Tax=Thermobifida fusca RepID=Q47TC2_THEFY
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:AAZ54295.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
PLM3_127_b2_sep16_scaffold_408_17
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21351..22565)
DNA (1215bp) protein (405aa)
glutamate N-acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI00037D1A55
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_127_b2_sep16_scaffold_408_18
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22645..25164)
DNA (2520bp) protein (840aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000375C3DF
PLM3_127_b2_sep16_scaffold_408_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(25313..26371)
DNA (1059bp) protein (353aa)
Phenylalanine--tRNA ligase alpha subunit Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WQJ4_ALIAD
pheS; phenylalanyl-tRNA synthetase subunit alpha
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_408_20
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26475..27539)
DNA (1065bp) protein (355aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
histidine kinase Tax=Frankia sp. BCU110501 RepID=UPI000368E80F
PAS/PAC sensor signal transduction histidine kinase
PLM3_127_b2_sep16_scaffold_408_21
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27532..28353)
DNA (822bp) protein (274aa)
RNA methyltransferase Tax=Streptomyces vitaminophilus RepID=UPI0003756F1E
Uncharacterized protein {ECO:0000313|EMBL:EPD96500.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
tRNA/rRNA methyltransferase SpoU
PLM3_127_b2_sep16_scaffold_408_22
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(28421..28780)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6XUN3_PROPF
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
PLM3_127_b2_sep16_scaffold_408_23
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(28861..29055)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVC8_9ACTN
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
50S ribosomal protein L35
PLM3_127_b2_sep16_scaffold_408_24
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29098..29673)
DNA (576bp) protein (192aa)
Translation initiation factor IF-3 Tax=Thermobifida fusca RepID=Q47N70_THEFY
translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
PLM3_127_b2_sep16_scaffold_408_25
Gordonia soli, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30111..30593
DNA (483bp) protein (161aa)
Uncharacterized protein Tax=Gordonia soli NBRC 108243 RepID=M0QQP8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAC71005.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia soli NBRC 108243.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_408_26
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(30720..30923)
DNA (204bp) protein (68aa)
Conserved domain protein Tax=Nocardioidaceae bacterium Broad-1 RepID=E9USK4_9ACTO
cspD; cold shock-like protein CspD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_408_27
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31061..31327
DNA (267bp) protein (89aa)
hypothetical protein Tax=Streptomyces RepID=UPI00035ED179
hypothetical protein
Amino acid transporter {ECO:0000313|EMBL:KIF67692.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
PLM3_127_b2_sep16_scaffold_408_28
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31341..32216)
DNA (876bp) protein (292aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
ATP phosphoribosyltransferase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A813_THECD
PLM3_127_b2_sep16_scaffold_408_29
unknown

Not on your lists

32732..32980
DNA (249bp) protein (83aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

View Taxonomy