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PLM3_127_b2_sep16_scaffold_5930

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5930_1
Shewanella halifaxensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(111..362)
DNA (252bp) protein (84aa)
hypothetical protein Tax=Smaragdicoccus niigatensis RepID=UPI0003815310
signal transduction protein
Putative signal transduction protein with EFhand domain {ECO:0000313|EMBL:ABZ76553.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella halifaxensis (strain HAW-EB4).;"
PLM3_127_b2_sep16_scaffold_5930_trna_2
unknown

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comp(441..514)
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_5930_2
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(695..1051)
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WX50_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23796.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
PLM3_127_b2_sep16_scaffold_5930_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1032..1331)
DNA (300bp) protein (100aa)
transcriptional regulator Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036EBEBD
ihfA; integration host factor subunit alpha
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM3_127_b2_sep16_scaffold_5930_4
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1335..2945)
DNA (1611bp) protein (537aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JTD0_9GAMM
PLM3_127_b2_sep16_scaffold_5930_5
Alcanivorax sp. P2S70, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3010..3645)
DNA (636bp) protein (212aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. P2S70.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit Tax=Alcanivorax sp. P2S70 RepID=U7FIP4_9GAMM
PLM3_127_b2_sep16_scaffold_5930_6
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3648..4670)
DNA (1023bp) protein (341aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
Phenylalanine--tRNA ligase alpha subunit Tax=Thioflavicoccus mobilis 8321 RepID=L0H1M4_9GAMM
phenylalanyl-tRNA synthetase subunit alpha
PLM3_127_b2_sep16_scaffold_5930_7

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comp(4866..5225)
DNA (360bp) protein (120aa)
Ribosomal protein L20, bacterial-type Tax=mine drainage metagenome RepID=T0YU38_9ZZZZ
Ribosomal protein L20, bacterial-type {ECO:0000313|EMBL:EQD35407.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LSU ribosomal protein L20P
PLM3_127_b2_sep16_scaffold_5930_8
Cardiobacterium hominis, Cardiobacterium, Cardiobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5255..5446)
DNA (192bp) protein (64aa)
50S ribosomal protein L35 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8I7_9GAMM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium.;" source="Cardiobacterium hominis ATCC 15826.;"
LSU ribosomal protein L35p
PLM3_127_b2_sep16_scaffold_5930_9

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comp(5598..5732)
DNA (135bp) protein (45aa)
Translation initiation factor IF-3 Tax=mine drainage metagenome RepID=T0ZNS3_9ZZZZ
Translation initiation factor IF-3 {ECO:0000313|EMBL:EQD46107.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Translation initiation factor IF-3
PLM3_127_b2_sep16_scaffold_5930_10
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6133..8061)
DNA (1929bp) protein (643aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
threonyl-tRNA synthetase Tax=Thiothrix flexilis RepID=UPI00037107C6
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_5930_trna_1
unknown

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comp(8134..8205)
DNA (72bp)
transferRNA Val
PLM3_127_b2_sep16_scaffold_5930_11
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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comp(8282..11983)
DNA (3702bp) protein (1234aa)
excinuclease ABC subunit B Tax=Salisaeta longa RepID=UPI0003B5E791
excinuclease ABC subunit B
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_127_b2_sep16_scaffold_5930_12
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11987..13291
DNA (1305bp) protein (435aa)
Aminotransferase class I and II Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C014_NITHN
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ADE16261.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Displaying 14 items

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