ggKbase home page

PLM3_127_b2_sep16_scaffold_46310

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_46310_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


3..386
DNA (384bp) protein (128aa)
30S ribosomal protein S3 Tax=Caenispirillum salinarum AK4 RepID=K9HFT5_9PROT bin=16ft_combo_ws3_JS1 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsC; 30S ribosomal protein S3
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


397..819
DNA (423bp) protein (141aa)
50S ribosomal protein L16 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RL16_HALOH bin=16ft_combo_ws3_JS1 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplP; 50S ribosomal protein L16
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


822..1028
DNA (207bp) protein (69aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L29
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


1025..1285
DNA (261bp) protein (87aa)
30S ribosomal protein S17 Tax=Alicyclobacillus acidocaldarius RepID=F8ILG3_ALIAT bin=16ft_combo_ws3_JS1 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsQ; 30S ribosomal protein S17
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


1304..1672
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribosomal protein L14
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


1672..2328
DNA (657bp) protein (219aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L24
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


2386..2607
DNA (222bp) protein (74aa)
50S ribosomal protein L5 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L5
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


2662..2847
DNA (186bp) protein (62aa)
SSU ribosomal protein S14p (S29e) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
30S ribosomal protein S14
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_46310_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


2952..3341
DNA (390bp) protein (130aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
30S ribosomal protein S8
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 9 items

View Taxonomy