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PLM3_127_b2_sep16_Rokubacteria_68_9

PLM3_127cm_b2_sep2016_Rokubacteria_68_9
In projects: PLM3_127cm_b2_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 351-400 of 674 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_127_b2_sep16_scaffold_72118
Phylum: Rokubacteria (100%)
3 3188 bp 68.91 8.52 97.68
PLM3_127_b2_sep16_scaffold_30563
Species: R_Alphaproteobacteria_66_14 (60%)
5 3005 bp 67.35 8.54 97.04
PLM3_127_b2_sep16_scaffold_29984
Domain: Bacteria (66.67%)
3 3039 bp 70.85 8.54 60.91
PLM3_127_b2_sep16_scaffold_75944
Species: GWC2_Rokubacteria_70_16_curated (60%)
5 3985 bp 68.88 8.54 90.19
PLM3_127_b2_sep16_scaffold_55405
Domain: Bacteria (85.71%)
7 6759 bp 68.80 8.54 72.39
PLM3_127_b2_sep16_scaffold_27813
Species: GWA2_Rokubacteria_70_23_curated (50%)
8 6081 bp 67.04 8.56 78.84
PLM3_127_b2_sep16_scaffold_38910
Species: GWC2_Rokubacteria_70_16_curated (50%)
4 2608 bp 66.03 8.57 78.80
PLM3_127_b2_sep16_scaffold_44348
Species: GWA2_Rokubacteria_70_23_curated (50%)
4 4180 bp 67.42 8.58 86.99
PLM3_127_b2_sep16_scaffold_36118
Phylum: Rokubacteria (66.67%)
3 2723 bp 65.00 8.59 90.78
PLM3_127_b2_sep16_scaffold_80484
Phylum: Proteobacteria (50%)
4 3021 bp 67.83 8.59 91.06
PLM3_127_b2_sep16_scaffold_37356
Class: Betaproteobacteria (57.14%)
7 4470 bp 68.50 8.59 84.97
PLM3_127_b2_sep16_scaffold_85461
Species: GWA2_Rokubacteria_70_23_curated (66.67%)
3 2724 bp 67.66 8.59 70.26
PLM3_127_b2_sep16_scaffold_25002
Phylum: Rokubacteria (60%)
5 3370 bp 69.20 8.59 92.76
PLM3_127_b2_sep16_scaffold_122775
Domain: Bacteria (100%)
3 2948 bp 69.47 8.60 99.53
PLM3_127_b2_sep16_scaffold_16742
Domain: Bacteria (100%)
6 4249 bp 70.56 8.61 87.90
PLM3_127_b2_sep16_scaffold_6940
Phylum: Rokubacteria (85.71%)
7 7033 bp 71.24 8.62 94.99
PLM3_127_b2_sep16_scaffold_40664
Phylum: Rokubacteria (50%)
6 2542 bp 68.06 8.62 94.41
PLM3_127_b2_sep16_scaffold_84461
Species: Burkholderia ambifaria (50%)
2 2558 bp 68.37 8.62 95.11
PLM3_127_b2_sep16_scaffold_56397
Phylum: Rokubacteria (50%)
6 3523 bp 70.05 8.64 93.41
PLM3_127_b2_sep16_scaffold_23999
Domain: Bacteria (100%)
3 3451 bp 66.56 8.65 82.41
PLM3_127_b2_sep16_scaffold_6882
Domain: Bacteria (80%)
20 16085 bp 67.78 8.65 89.34
PLM3_127_b2_sep16_scaffold_49149
Phylum: Proteobacteria (66.67%)
6 4814 bp 65.29 8.66 71.35
PLM3_127_b2_sep16_scaffold_38576
Species: GWA2_Rokubacteria_70_23_curated (66.67%)
9 6193 bp 66.28 8.67 90.20
PLM3_127_b2_sep16_scaffold_38647
Species: RLO_Betaproteobacteria_65_14 (60%)
5 3146 bp 67.07 8.68 99.36
PLM3_127_b2_sep16_scaffold_18475
Species: GWA2_Rokubacteria_70_23_curated (60%)
10 7619 bp 70.61 8.68 90.13
PLM3_127_b2_sep16_scaffold_10547
Phylum: Rokubacteria (66.67%)
9 6945 bp 67.31 8.68 97.88
PLM3_127_b2_sep16_scaffold_28100
Species: GWC2_Rokubacteria_70_16_curated (60%)
5 4539 bp 69.38 8.69 91.08
PLM3_127_b2_sep16_scaffold_79382
Species: CSP1_6_Rokubacteria (50%)
4 2726 bp 68.16 8.69 96.74
PLM3_127_b2_sep16_scaffold_16572
Species: GWC2_Rokubacteria_70_16_curated (100%)
4 4274 bp 69.05 8.70 94.83
PLM3_127_b2_sep16_scaffold_30119
Phylum: Rokubacteria (76.92%)
13 9037 bp 67.31 8.70 84.52
PLM3_127_b2_sep16_scaffold_57137
Phylum: Rokubacteria (66.67%)
6 3185 bp 67.38 8.71 86.94
PLM3_127_b2_sep16_scaffold_52200
Domain: Bacteria (80%)
5 3458 bp 65.30 8.72 75.04
PLM3_127_b2_sep16_scaffold_46013
Domain: Bacteria (66.67%)
9 5679 bp 67.14 8.72 94.14
PLM3_127_b2_sep16_scaffold_37901
Phylum: Rokubacteria (66.67%)
3 2649 bp 66.52 8.72 82.11
PLM3_127_b2_sep16_scaffold_25993
Phylum: Rokubacteria (100%)
6 4296 bp 70.76 8.73 81.08
PLM3_127_b2_sep16_scaffold_33757
Species: GWA2_Rokubacteria_70_23_curated (66.67%)
3 2833 bp 68.13 8.74 95.41
PLM3_127_b2_sep16_scaffold_13879
Phylum: Rokubacteria (100%)
6 4734 bp 70.05 8.75 94.17
PLM3_127_b2_sep16_scaffold_24286
Species: GWC2_Rokubacteria_70_16_curated (60%)
5 3425 bp 69.20 8.76 91.01
PLM3_127_b2_sep16_scaffold_32272
Domain: Bacteria (100%)
3 2910 bp 68.28 8.76 91.65
PLM3_127_b2_sep16_scaffold_27173
Phylum: Rokubacteria (60%)
5 3219 bp 69.52 8.76 95.99
PLM3_127_b2_sep16_scaffold_37756
Phylum: Rokubacteria (66.67%)
3 2655 bp 67.68 8.76 92.20
PLM3_127_b2_sep16_scaffold_60517
Species: GWA2_Rokubacteria_70_23_curated (50%)
6 4502 bp 67.59 8.76 96.62
PLM3_127_b2_sep16_scaffold_17096
Class: Betaproteobacteria (60%)
5 4197 bp 68.98 8.79 88.99
PLM3_127_b2_sep16_scaffold_39455
Species: GWA2_Rokubacteria_70_23_curated (75%)
4 3326 bp 68.04 8.79 93.63
PLM3_127_b2_sep16_scaffold_26100
Phylum: Rokubacteria (75%)
4 3291 bp 67.00 8.80 91.52
PLM3_127_b2_sep16_scaffold_12242
Domain: Bacteria (87.5%)
8 5088 bp 65.45 8.81 95.22
PLM3_127_b2_sep16_scaffold_23643
Species: GWC2_Rokubacteria_70_16_curated (55.56%)
9 8583 bp 69.52 8.81 91.47
PLM3_127_b2_sep16_scaffold_89876
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 3080 bp 69.19 8.81 78.90
PLM3_127_b2_sep16_scaffold_26771
Phylum: Rokubacteria (75%)
8 5596 bp 66.24 8.82 82.67
PLM3_127_b2_sep16_scaffold_30445
Phylum: Rokubacteria (80%)
5 3011 bp 65.76 8.82 81.80
Displaying items 351-400 of 674 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.