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PLM1_100_b1_sep16_scaffold_2004

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_2004_1
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(3..1406)
-----------------
DNA (1404bp)
protein (468aa)
PAS domain S-box Tax=Oscillatoria acuminata PCC 6304 RepID=K9TMW8_9CYAN
GGDEF: diguanylate cyclase (GGDEF) domain
GGDEF: diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:AHY47118.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM1_100_b1_sep16_scaffold_2004_2
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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1454..2860
-----------------
DNA (1407bp)
protein (469aa)
Signal transduction histidine kinase bin=RBG_19FT_COMBO_GAL15_69_19 species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2004_3
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

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2918..3055
-----------------
DNA (138bp)
protein (46aa)
Putative uncharacterized protein Tax=Caenorhabditis remanei RepID=E3M7I6_CAERE
Uncharacterized protein {ECO:0000313|EMBL:KFY24509.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseudogymnoascus.;" source="Pseudogymnoascus pannorum VKM F-4281 (FW-2241).;"
PLM1_100_b1_sep16_scaffold_2004_4
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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3125..3712
-----------------
DNA (588bp)
protein (196aa)
Putative transcriptional regulatory protein pdtaR Tax=Nitrolancetus hollandicus Lb RepID=I4ENA2_9CHLR
two-component system, regulatory protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2004_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3877..5631)
-----------------
DNA (1755bp)
protein (585aa)
ABC transporter related protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8W6_CONWI
ABC transporter
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2004_6
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(5646..7502)
-----------------
DNA (1857bp)
protein (619aa)
Transketolase central region Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEI0_THET1
transketolase
Transketolase central region {ECO:0000313|EMBL:ACZ41336.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM1_100_b1_sep16_scaffold_2004_7
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7523..8023
-----------------
DNA (501bp)
protein (167aa)
rpiB; ribose-5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IHS2_PHYMF
Tax=RBG_16_Deltaproteobacteria_50_11_curated
PLM1_100_b1_sep16_scaffold_2004_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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8045..9151
-----------------
DNA (1107bp)
protein (369aa)
transaldolase (EC:2.2.1.2)
Transaldolase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZZ9_RUBXD
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_2004_9
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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9158..10501
-----------------
DNA (1344bp)
protein (448aa)
putative glucose-6-phosphate isomerase (EC:5.3.1.9)
Bifunctional transaldolase/phosoglucose isomerase Tax=mine drainage metagenome RepID=T0ZAS1_9ZZZZ
Tax=RBG_16_Chloroflexi_64_32_curated
PLM1_100_b1_sep16_scaffold_2004_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10498..11382
-----------------
DNA (885bp)
protein (295aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|RuleBase:RU000485}; EC=1.1.1.44 {ECO:0000256|RuleBase:RU000485};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL).;"
6-phosphogluconate dehydrogenase Tax=Sulfobacillus thermosulfidooxidans RepID=UPI00030893B8
gnd; 6-phosphogluconate dehydrogenase
PLM1_100_b1_sep16_scaffold_2004_11
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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11366..12874
-----------------
DNA (1509bp)
protein (503aa)
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Glucose-6-phosphate 1-dehydrogenase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0S2_THERP
PLM1_100_b1_sep16_scaffold_2004_12
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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13045..13896
-----------------
DNA (852bp)
protein (284aa)
Glucose-6-P dehydrogenase subunit bin=GWC2_Chloroflexi_73_18 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
glucose-6-phosphate dehydrogenase
Tax=GWC2_RIF_CHLX_73_18_curated
PLM1_100_b1_sep16_scaffold_2004_13
unknown

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comp(14199..14345)
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2004_14
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(14342..15442)
-----------------
DNA (1101bp)
protein (367aa)
amidase (EC:3.5.1.4)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A {ECO:0000313|EMBL:ABQ91446.1}; EC=6.3.5.- {ECO:0000313|EMBL:ABQ91446.1};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXU3_ROSS1
PLM1_100_b1_sep16_scaffold_2004_15
unknown

Not on your lists

comp(15468..15584)
-----------------
DNA (117bp)
protein (39aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2004_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(15584..15859)
-----------------
DNA (276bp)
protein (92aa)
ubiA1; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM1_100_b1_sep16_scaffold_2004_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(15844..16785)
-----------------
DNA (942bp)
protein (314aa)
Protoheme IX farnesyltransferase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9S5_SPHTD
protoheme IX farnesyltransferase
Protoheme IX farnesyltransferase {ECO:0000313|EMBL:ACZ40568.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM1_100_b1_sep16_scaffold_2004_18
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(16782..17102)
-----------------
DNA (321bp)
protein (107aa)
cytochrome c oxidase subunit I; K15408 cytochrome c oxidase subunit I+III [EC:1.9.3.1] bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
cytochrome c oxidase subunit I type
Tax=CSP1_2_Dadabacteria
Displaying 18 items

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