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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 551-600 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_295
Class: Deltaproteobacteria (63.64%)
11 14343 bp 49.06 11.08 87.37
PLM4_90_b1_sep16_scaffold_14426
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 4231 bp 47.36 14.71 87.43
PLM4_90_b1_sep16_scaffold_10834
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 2933 bp 47.80 7.88 87.45
PLM4_90_b1_sep16_scaffold_6682
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
6 3734 bp 47.27 13.70 87.49
PLM4_90_b1_sep16_scaffold_2387
Class: Deltaproteobacteria (81.82%)
11 10716 bp 48.60 15.57 87.54
PLM4_90_b1_sep16_scaffold_8197
Domain: Bacteria (55.56%)
9 5931 bp 49.89 8.78 87.61
PLM4_90_b1_sep16_scaffold_14116
Class: Deltaproteobacteria (66.67%)
3 2564 bp 53.04 8.60 87.64
PLM4_90_b1_sep16_scaffold_8095
Class: Deltaproteobacteria (80%)
5 5324 bp 47.93 17.24 87.73
PLM4_90_b1_sep16_scaffold_1029
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
16 11029 bp 47.06 14.67 87.80
PLM4_90_b1_sep16_scaffold_2351
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
7 6122 bp 49.30 17.32 87.81
PLM4_90_b1_sep16_scaffold_4853
Domain: Bacteria (50%)
8 6154 bp 45.43 19.11 87.85
PLM4_90_b1_sep16_scaffold_16133
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 3517 bp 46.55 13.82 87.86
PLM4_90_b1_sep16_scaffold_13751
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
2 3520 bp 49.20 19.39 87.87
PLM4_90_b1_sep16_scaffold_4602
Class: Deltaproteobacteria (66.67%)
6 6985 bp 50.59 8.48 87.87
PLM4_90_b1_sep16_scaffold_11564
Species: RBG_13_Deltaproteobacteria_53_10_curated (66.67%)
3 2837 bp 51.53 9.52 87.87
PLM4_90_b1_sep16_scaffold_25485
Class: Deltaproteobacteria (66.67%)
3 3081 bp 47.29 15.43 87.93
PLM4_90_b1_sep16_scaffold_4080
Class: Deltaproteobacteria (100%)
18 8590 bp 49.06 19.23 87.94
PLM4_90_b1_sep16_scaffold_4632
Class: Deltaproteobacteria (50%)
4 4694 bp 49.66 13.65 87.94
PLM4_90_b1_sep16_scaffold_14634
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4737 bp 47.88 23.08 87.97
PLM4_90_b1_sep16_scaffold_5787
Species: RBG_13_Deltaproteobacteria_52_11_curated (60%)
5 4013 bp 48.92 6.80 87.99
PLM4_90_b1_sep16_scaffold_2447
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (87.5%)
8 7769 bp 46.62 12.11 88.00
PLM4_90_b1_sep16_scaffold_12531
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 2727 bp 47.78 18.98 88.01
PLM4_90_b1_sep16_scaffold_12569
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 4956 bp 46.19 16.98 88.08
PLM4_90_b1_sep16_scaffold_1282
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
4 7999 bp 49.03 14.50 88.21
PLM4_90_b1_sep16_scaffold_12605
Class: Deltaproteobacteria (66.67%)
3 2720 bp 54.49 24.04 88.24
PLM4_90_b1_sep16_scaffold_5383
Class: Deltaproteobacteria (100%)
7 5310 bp 51.49 8.53 88.25
PLM4_90_b1_sep16_scaffold_10458
Class: Deltaproteobacteria (100%)
4 2986 bp 50.17 12.76 88.31
PLM4_90_b1_sep16_scaffold_13439
Class: Deltaproteobacteria (80%)
5 3611 bp 46.50 13.42 88.31
PLM4_90_b1_sep16_scaffold_1044
Class: Deltaproteobacteria (72.73%)
11 8691 bp 47.31 15.81 88.33
PLM4_90_b1_sep16_scaffold_5005
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 4289 bp 46.54 8.29 88.34
PLM4_90_b1_sep16_scaffold_12166
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 4730 bp 46.98 12.34 88.35
PLM4_90_b1_sep16_scaffold_2234
Species: RBG_16_Deltaproteobacteria_47_11_curated (54.55%)
11 10239 bp 47.87 19.26 88.40
PLM4_90_b1_sep16_scaffold_3438
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 5123 bp 47.57 14.61 88.42
PLM4_90_b1_sep16_scaffold_4048
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
9 8912 bp 48.51 13.08 88.43
PLM4_90_b1_sep16_scaffold_20926
Species: R_OP3X_45_16 (66.67%)
6 3874 bp 52.30 10.34 88.44
PLM4_90_b1_sep16_scaffold_9652
Class: Deltaproteobacteria (100%)
4 3107 bp 47.41 11.49 88.45
PLM4_90_b1_sep16_scaffold_282
Class: Deltaproteobacteria (87.5%)
16 13581 bp 48.07 16.99 88.47
PLM4_90_b1_sep16_scaffold_11264
Phylum: Proteobacteria (66.67%)
3 2877 bp 52.97 12.62 88.53
PLM4_90_b1_sep16_scaffold_2606
Class: Deltaproteobacteria (85.71%)
7 5831 bp 50.97 13.56 88.54
PLM4_90_b1_sep16_scaffold_4598
Species: RBG_19FT_COMBO_Chloroflexi_48_23_curated (50%)
6 6788 bp 50.88 12.77 88.57
PLM4_90_b1_sep16_scaffold_2113
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
9 11589 bp 49.53 15.20 88.58
PLM4_90_b1_sep16_scaffold_9131
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3190 bp 50.50 17.02 88.59
PLM4_90_b1_sep16_scaffold_5293
Species: RBG_16_Deltaproteobacteria_47_11_curated (55.56%)
9 7581 bp 49.03 15.79 88.60
PLM4_90_b1_sep16_scaffold_6762
Class: Deltaproteobacteria (60%)
5 4431 bp 45.79 20.62 88.63
PLM4_90_b1_sep16_scaffold_4978
Class: Deltaproteobacteria (80%)
5 4300 bp 50.47 14.23 88.67
PLM4_90_b1_sep16_scaffold_6240
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 3863 bp 48.25 11.45 88.69
PLM4_90_b1_sep16_scaffold_8119
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 3386 bp 48.14 16.61 88.69
PLM4_90_b1_sep16_scaffold_9585
Species: GWC2_Syntrophus_56_31_curated (71.43%)
7 4191 bp 51.94 9.13 88.69
PLM4_90_b1_sep16_scaffold_1260
Class: Deltaproteobacteria (100%)
8 8056 bp 47.58 16.42 88.70
PLM4_90_b1_sep16_scaffold_7813
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
10 7590 bp 47.60 13.95 88.72
Displaying items 551-600 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.