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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 601-650 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_7580
Class: Deltaproteobacteria (75%)
4 3506 bp 50.74 7.62 88.73
PLM4_90_b1_sep16_scaffold_1508
Class: Deltaproteobacteria (84.62%)
13 14137 bp 49.49 19.76 88.75
PLM4_90_b1_sep16_scaffold_25228
Class: Deltaproteobacteria (75%)
4 2863 bp 47.99 10.90 88.86
PLM4_90_b1_sep16_scaffold_4550
Species: RBG_16_Deltaproteobacteria_47_11_curated (57.14%)
7 5095 bp 48.11 6.86 88.91
PLM4_90_b1_sep16_scaffold_11584
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
2 2834 bp 45.38 7.62 88.92
PLM4_90_b1_sep16_scaffold_3601
Class: Deltaproteobacteria (58.33%)
12 9143 bp 48.99 9.29 88.92
PLM4_90_b1_sep16_scaffold_3947
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 4811 bp 48.26 15.84 88.92
PLM4_90_b1_sep16_scaffold_11258
Class: Deltaproteobacteria (100%)
3 2877 bp 50.33 8.60 88.95
PLM4_90_b1_sep16_scaffold_26926
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3030 bp 48.68 15.15 89.01
PLM4_90_b1_sep16_scaffold_190
Class: Deltaproteobacteria (68.75%)
16 17482 bp 49.84 9.13 89.01
PLM4_90_b1_sep16_scaffold_4750
Class: Deltaproteobacteria (71.43%)
14 11173 bp 46.93 11.67 89.04
PLM4_90_b1_sep16_scaffold_9518
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3126 bp 48.85 11.18 89.06
PLM4_90_b1_sep16_scaffold_7097
Species: RBG_16_Deltaproteobacteria_47_11_curated (55.56%)
9 6565 bp 48.18 17.68 89.06
PLM4_90_b1_sep16_scaffold_3020
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 5901 bp 47.86 13.14 89.07
PLM4_90_b1_sep16_scaffold_20127
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
9 4483 bp 46.80 13.28 89.14
PLM4_90_b1_sep16_scaffold_20566
Species: RBG_16_Deltaproteobacteria_49_23_curated (60%)
5 3490 bp 46.82 8.51 89.14
PLM4_90_b1_sep16_scaffold_534
Class: Deltaproteobacteria (92.31%)
13 10993 bp 48.33 16.06 89.16
PLM4_90_b1_sep16_scaffold_14398
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 2537 bp 46.87 9.16 89.16
PLM4_90_b1_sep16_scaffold_2255
Species: RBG_16_Deltaproteobacteria_47_11_curated (85.71%)
7 7068 bp 48.06 19.40 89.18
PLM4_90_b1_sep16_scaffold_4293
Class: Deltaproteobacteria (100%)
9 6462 bp 47.34 16.62 89.18
PLM4_90_b1_sep16_scaffold_11955
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
2 2792 bp 48.53 18.32 89.29
PLM4_90_b1_sep16_scaffold_11648
Domain: Bacteria (50%)
4 3702 bp 49.78 17.95 89.30
PLM4_90_b1_sep16_scaffold_8793
Species: RBG_16_Deltaproteobacteria_48_10_curated (57.14%)
7 5991 bp 48.64 15.27 89.38
PLM4_90_b1_sep16_scaffold_14186
Class: Deltaproteobacteria (80%)
5 2557 bp 43.88 7.68 89.40
PLM4_90_b1_sep16_scaffold_11673
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 4394 bp 46.61 7.54 89.44
PLM4_90_b1_sep16_scaffold_16156
Class: Deltaproteobacteria (80%)
5 4477 bp 50.06 10.79 89.46
PLM4_90_b1_sep16_scaffold_6779
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3709 bp 49.45 13.91 89.46
PLM4_90_b1_sep16_scaffold_5837
Class: Deltaproteobacteria (100%)
5 4536 bp 46.72 14.48 89.48
PLM4_90_b1_sep16_scaffold_12142
Class: Deltaproteobacteria (83.33%)
6 5265 bp 45.32 16.15 89.57
PLM4_90_b1_sep16_scaffold_3569
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
12 13020 bp 47.76 16.72 89.59
PLM4_90_b1_sep16_scaffold_12318
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 6034 bp 50.18 18.47 89.59
PLM4_90_b1_sep16_scaffold_5108
Class: Deltaproteobacteria (100%)
5 6113 bp 50.45 14.53 89.66
PLM4_90_b1_sep16_scaffold_161
Class: Deltaproteobacteria (64%)
25 27600 bp 48.09 9.26 89.68
PLM4_90_b1_sep16_scaffold_2199
Domain: Bacteria (71.43%)
7 6327 bp 51.81 6.33 89.71
PLM4_90_b1_sep16_scaffold_420
Class: Deltaproteobacteria (76.92%)
13 15509 bp 45.50 7.52 89.72
PLM4_90_b1_sep16_scaffold_34366
Domain: Bacteria (80%)
5 3213 bp 48.33 6.12 89.73
PLM4_90_b1_sep16_scaffold_3872
Class: Deltaproteobacteria (50%)
4 4857 bp 53.08 15.13 89.75
PLM4_90_b1_sep16_scaffold_2429
Class: Deltaproteobacteria (92.31%)
13 10947 bp 47.31 18.96 89.75
PLM4_90_b1_sep16_scaffold_5009
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 4288 bp 48.30 11.37 89.76
PLM4_90_b1_sep16_scaffold_9692
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 5608 bp 47.86 18.11 89.76
PLM4_90_b1_sep16_scaffold_2561
Domain: Bacteria (85.71%)
7 5885 bp 51.52 18.35 89.77
PLM4_90_b1_sep16_scaffold_26902
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
4 3204 bp 50.25 12.17 89.79
PLM4_90_b1_sep16_scaffold_7572
Class: Deltaproteobacteria (75%)
4 3507 bp 52.24 7.53 89.82
PLM4_90_b1_sep16_scaffold_1267
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 8039 bp 48.08 10.86 89.82
PLM4_90_b1_sep16_scaffold_8777
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (57.14%)
7 4747 bp 49.04 10.81 89.87
PLM4_90_b1_sep16_scaffold_1871
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
12 9936 bp 48.95 16.39 89.95
PLM4_90_b1_sep16_scaffold_3887
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 4847 bp 48.28 21.45 89.99
PLM4_90_b1_sep16_scaffold_10420
Class: Deltaproteobacteria (60%)
5 5213 bp 50.30 7.19 90.01
PLM4_90_b1_sep16_scaffold_12970
Domain: Bacteria (50%)
8 4596 bp 49.41 7.21 90.01
PLM4_90_b1_sep16_scaffold_29720
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 2646 bp 48.11 16.10 90.02
Displaying items 601-650 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.