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PLM3_60_b1_sep16_scaffold_373

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_373_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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3..806
DNA (804bp) protein (268aa)
maeA; malate dehydrogenase (oxaloacetate-decarboxylating) (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:CBK42152.1}; EC=1.1.1.38 {ECO:0000313|EMBL:CBK42152.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Malate dehydrogenase (Oxaloacetate-decarboxylating) Tax=Candidatus Nitrospira defluvii RepID=D8PFW5_9BACT
PLM3_60_b1_sep16_scaffold_373_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(817..1311)
DNA (495bp) protein (165aa)
Cytochrome 579 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0XWS8_9BACT
cytochrome c class I
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

1515..2120
DNA (606bp) protein (202aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PFW7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42154.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_373_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

2156..3343
DNA (1188bp) protein (396aa)
rnd; ribonuclease D (EC:3.1.13.5)
Ribonuclease D Tax=Candidatus Nitrospira defluvii RepID=D8PFW8_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3340..3690)
DNA (351bp) protein (117aa)
putative arsenate reductase (EC:1.20.4.1)
Putative Arsenate reductase (Glutaredoxin) Tax=Candidatus Nitrospira defluvii RepID=D8PFX0_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

3810..4181
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PFX1_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_373_7
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(4212..4601)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PFX2_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_373_8
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

4752..5603
DNA (852bp) protein (284aa)
3-oxoadipate enol-lactone hydrolase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RA1_SYMTH
3-oxoadipate enol-lactone hydrolase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_60_b1_sep16_scaffold_373_9
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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5603..6526
DNA (924bp) protein (308aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BPW6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR22121.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
aldo/keto reductase
PLM3_60_b1_sep16_scaffold_373_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6646..7779
DNA (1134bp) protein (378aa)
gltA; Citrate synthase (EC:2.3.3.1)
Citrate synthase Tax=Candidatus Nitrospira defluvii RepID=D8PFX4_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_11
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(7863..8108)
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Desulfovibrio africanus RepID=F3YXN6_DESAF
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_373_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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8282..8599
DNA (318bp) protein (106aa)
hypothetical protein bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
GYD family protein
Tax=CSP1_6_Rokubacteria
PLM3_60_b1_sep16_scaffold_373_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

8600..10135
DNA (1536bp) protein (512aa)
fumC; fumarate hydratase, class II (EC:4.2.1.2)
Fumarate hydratase class II Tax=Candidatus Nitrospira defluvii RepID=D8PFX7_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

10379..11773
DNA (1395bp) protein (465aa)
putative ferredoxin-NADP(+) reductase (EC:1.18.1.2)
Putative Ferredoxin-NADP(+) reductase Tax=Candidatus Nitrospira defluvii RepID=D8PFX8_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(11770..12660)
DNA (891bp) protein (297aa)
ppnK; NAD(+) kinase (EC:2.7.1.23)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Probable inorganic polyphosphate/ATP-NAD kinase Tax=Candidatus Nitrospira defluvii RepID=D8PFX9_9BACT
PLM3_60_b1_sep16_scaffold_373_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12896..15325
DNA (2430bp) protein (810aa)
Chaperone protein ClpB Tax=Candidatus Nitrospira defluvii RepID=D8PFY0_9BACT
clpB3; chaperone protein ClpB
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


15578..16618
DNA (1041bp) protein (347aa)
gcp; putative O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PFY1_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

16810..18327
DNA (1518bp) protein (506aa)
GTPase HflX Tax=Candidatus Nitrospira defluvii RepID=D8PFY2_9BACT
putative GTPase HflX, GTP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18347..19030
DNA (684bp) protein (228aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III Tax=Candidatus Nitrospira defluvii RepID=D8PFY3_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18973..19908
DNA (936bp) protein (312aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PFY4_9BACT
yicC; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_21
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

19993..20649
DNA (657bp) protein (219aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Guanylate kinase Tax=Candidatus Nitrospira defluvii RepID=D8PFY5_9BACT
PLM3_60_b1_sep16_scaffold_373_22
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

20642..21001
DNA (360bp) protein (120aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
DNA-directed RNA polymerase subunit omega Tax=Candidatus Nitrospira defluvii RepID=D8PFY6_9BACT
PLM3_60_b1_sep16_scaffold_373_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21011..22264
DNA (1254bp) protein (418aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC Tax=Candidatus Nitrospira defluvii RepID=D8PFY7_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_24
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

22272..22841
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PFY8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42175.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_373_25
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

22992..23519
DNA (528bp) protein (176aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase Tax=Candidatus Nitrospira defluvii RepID=D8PFY9_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

23516..23869
DNA (354bp) protein (118aa)
Elongation factor P Tax=Candidatus Nitrospira defluvii RepID=D8PFZ0_9BACT
efp; elongation factor P
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_373_27
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

24134..24619
DNA (486bp) protein (162aa)
Acetyl CoA carboxylase, biotin carboxyl carrier protein Tax=Candidatus Nitrospira defluvii RepID=D8PFZ1_9BACT
accB; acetyl Coa carboxylase, biotin carboxyl carrier protein
Acetyl CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:CBK42178.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_373_28
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

24649..25998
DNA (1350bp) protein (450aa)
accC; acetyl-Coa carboxylase, biotin carboxylase (EC:6.4.1.2 6.3.4.14)
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:CBK42179.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CBK42179.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CBK42179.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Acetyl-CoA carboxylase, biotin carboxylase Tax=Candidatus Nitrospira defluvii RepID=D8PFZ2_9BACT
PLM3_60_b1_sep16_scaffold_373_29
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

26097..26693
DNA (597bp) protein (199aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Thiamine-phosphate synthase Tax=Candidatus Nitrospira defluvii RepID=D8PFZ3_9BACT
PLM3_60_b1_sep16_scaffold_373_30
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(26674..26934)
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying 30 items

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