ggKbase home page

PLM3_60_b1_sep16_scaffold_2126

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_2126_1
unknown

Not on your lists

2..304
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2126_2
Prochlorococcus sp. MIT 0604, Prochlorococcus, Prochlorales, Cyanobacteria, Bacteria

Not on your lists

388..915
DNA (528bp) protein (176aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ95500.1}; species="Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.;" source="Prochlorococcus sp. MIT 0604.;"
PLM3_60_b1_sep16_scaffold_2126_trna_1
unknown

Not on your lists

comp(1177..1250)
DNA (74bp)
transferRNA Arg
PLM3_60_b1_sep16_scaffold_2126_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1398..1700)
DNA (303bp) protein (101aa)
Putative RNA-binding protein RbpA Tax=Candidatus Nitrospira defluvii RepID=D8PIC8_9BACT
putative RNA-binding protein RbpA
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_b1_sep16_scaffold_2126_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1944..2444)
DNA (501bp) protein (167aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBK40224.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBK40224.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Shikimate kinase Tax=Candidatus Nitrospira defluvii RepID=D8PAG5_9BACT
PLM3_60_b1_sep16_scaffold_2126_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2441..2803)
DNA (363bp) protein (121aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=D8PAG4_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_6
unknown

Not on your lists

3026..3283
DNA (258bp) protein (86aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2126_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3232..3555)
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(3843..4598)
DNA (756bp) protein (252aa)
short-chain dehydrogenase (EC:1.1.1.-)
Short-chain dehydrogenase {ECO:0000313|EMBL:CBK40222.1}; EC=1.1.1.- {ECO:0000313|EMBL:CBK40222.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Short-chain dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=D8PAG3_9BACT
PLM3_60_b1_sep16_scaffold_2126_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4599..5462)
DNA (864bp) protein (288aa)
trmI; tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36)
tRNA (Adenine-N(1)-)-methyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PAG2_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_10
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

5652..6902
DNA (1251bp) protein (417aa)
Membrane-bound serine protease Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJM0_THEYD
membrane-bound serine protease
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3_60_b1_sep16_scaffold_2126_11
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

7019..7789
DNA (771bp) protein (257aa)
Spfh/band 7 domain protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
membrane protease subunit, stomatin/prohibitin
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3_60_b1_sep16_scaffold_2126_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

8071..9330
DNA (1260bp) protein (420aa)
RNA polymerase sigma factor Tax=Candidatus Nitrospira defluvii RepID=D8PAG1_9BACT
rpoD; RNA polymerase sigma-70 factor
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9484..10101
DNA (618bp) protein (206aa)
trypsin-like serine peptidase, S1C (EC:3.4.21.-)
Trypsin-like serine peptidase, S1C Tax=Candidatus Nitrospira defluvii RepID=D8PAG0_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

10463..11230
DNA (768bp) protein (256aa)
lipB; lipoyltransferase (EC:2.3.1.-)
Octanoyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PAF9_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11274..11693
DNA (420bp) protein (140aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=D8PAF8_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

11690..12574
DNA (885bp) protein (295aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=D8PAF8_9BACT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185, ECO:0000313|EMBL:CBK40217.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_2126_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12676..13062
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAF7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

13067..13456
DNA (390bp) protein (130aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_19
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

13540..13746
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAF6_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_2126_20
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(13798..14268)
DNA (471bp) protein (157aa)
Putative acetyltransferase Tax=Leptospirillum RepID=J9ZFC5_LEPFM
acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:AFS54292.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferriphilum (strain ML-04).;"
PLM3_60_b1_sep16_scaffold_2126_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14501..15037
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAF3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_22
unknown

Not on your lists

15053..15496
DNA (444bp) protein (148aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2126_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(15499..16401)
DNA (903bp) protein (301aa)
putative d-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Putative D-alanyl-D-alanine carboxypeptidase Tax=Candidatus Nitrospira defluvii RepID=D8PAF2_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_24
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(16412..16570)
DNA (159bp) protein (53aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAF1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_25
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(17094..18302)
DNA (1209bp) protein (403aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAE9_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18578..18898
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAE8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_27
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(19135..19767)
DNA (633bp) protein (211aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_28
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(20003..20995)
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAE7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_2126_29
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(21017..21295)
DNA (279bp) protein (93aa)
Integration host factor, beta subunit Tax=Candidatus Nitrospira defluvii RepID=D8PAE6_9BACT
ihfB; integration host factor subunit beta
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying items 1-30 of 32 in total

View Taxonomy