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PLM3_60_b1_sep16_Nitrospirae_57_13

PLM3_60cm_b1_sep2016_Nitrospirae_57_13
In projects: PLM3_60cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Nitrospirae  →  Bacteria

Displaying items 1-50 of 284 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_60_b1_sep16_scaffold_1096
Species: Candidatus Nitrospira defluvii (61.54%)
26 24063 bp 58.47 12.30 84.86
PLM3_60_b1_sep16_scaffold_438
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (76.92%)
26 23192 bp 57.55 13.68 87.14
PLM3_60_b1_sep16_scaffold_1470
Phylum: Nitrospirae (68%)
25 22470 bp 55.72 15.09 82.40
PLM3_60_b1_sep16_scaffold_368
Phylum: Nitrospirae (81.82%)
22 22196 bp 56.15 16.27 83.63
PLM3_60_b1_sep16_scaffold_213
Species: Candidatus Nitrospira defluvii (60%)
20 21482 bp 57.67 12.97 89.56
PLM3_60_b1_sep16_scaffold_315
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (68.18%)
22 18690 bp 57.55 12.46 90.85
PLM3_60_b1_sep16_scaffold_530
Phylum: Nitrospirae (85.71%)
21 17619 bp 57.96 14.15 89.32
PLM3_60_b1_sep16_scaffold_541
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (55.56%)
18 15784 bp 58.83 14.54 86.69
PLM3_60_b1_sep16_scaffold_988
Species: Candidatus Nitrospira defluvii (76.92%)
13 15614 bp 57.27 12.98 85.65
PLM3_60_b1_sep16_scaffold_2680 20 15151 bp 56.41 11.97 74.81
PLM3_60_b1_sep16_scaffold_1328
Phylum: Nitrospirae (66.67%)
15 13710 bp 55.73 12.64 77.02
PLM3_60_b1_sep16_scaffold_3173
Phylum: Proteobacteria (77.78%)
9 12542 bp 58.28 10.09 93.21
PLM3_60_b1_sep16_scaffold_832 21 12447 bp 55.79 14.38 71.61
PLM3_60_b1_sep16_scaffold_862
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (61.54%)
13 12271 bp 57.22 15.30 93.83
PLM3_60_b1_sep16_scaffold_916
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
14 12005 bp 56.84 10.97 83.21
PLM3_60_b1_sep16_scaffold_1767
Phylum: Nitrospirae (66.67%)
15 11928 bp 57.00 14.40 92.99
PLM3_60_b1_sep16_scaffold_1961
Species: Candidatus Nitrospira defluvii (72.73%)
11 11790 bp 58.00 13.84 89.49
PLM3_60_b1_sep16_scaffold_2321
Phylum: Nitrospirae (88.89%)
9 11767 bp 57.30 15.12 81.58
PLM3_60_b1_sep16_scaffold_3567
Species: Candidatus Nitrospira defluvii (55.56%)
9 11540 bp 58.10 12.18 88.02
PLM3_60_b1_sep16_scaffold_1427
Species: Candidatus Nitrospira defluvii (50%)
12 11314 bp 59.07 12.98 90.84
PLM3_60_b1_sep16_scaffold_5912
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (75%)
12 11053 bp 57.36 14.49 94.07
PLM3_60_b1_sep16_scaffold_1297
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (90%)
10 10853 bp 53.63 16.97 85.36
PLM3_60_b1_sep16_scaffold_1174
Phylum: Nitrospirae (81.25%)
16 10741 bp 56.34 15.39 81.53
PLM3_60_b1_sep16_scaffold_2014
Phylum: Nitrospirae (100%)
9 10657 bp 57.64 11.46 94.42
PLM3_60_b1_sep16_scaffold_1739
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
14 10582 bp 57.14 15.61 80.67
PLM3_60_b1_sep16_scaffold_1362
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (82.35%)
17 10496 bp 56.46 13.75 86.52
PLM3_60_b1_sep16_scaffold_1268
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (66.67%)
15 10364 bp 57.66 13.37 86.84
PLM3_60_b1_sep16_scaffold_5924
Species: Candidatus Nitrospira defluvii (63.64%)
11 10028 bp 58.49 13.46 84.15
PLM3_60_b1_sep16_scaffold_2423
Phylum: Nitrospirae (60%)
15 10023 bp 57.86 13.06 91.69
PLM3_60_b1_sep16_scaffold_2274
Species: Candidatus Nitrospira defluvii (53.85%)
13 9818 bp 58.16 11.89 86.96
PLM3_60_b1_sep16_scaffold_6622
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (62.5%)
8 9714 bp 57.66 16.20 78.63
PLM3_60_b1_sep16_scaffold_1471
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (60%)
10 9666 bp 59.47 13.22 90.07
PLM3_60_b1_sep16_scaffold_1510
Phylum: Nitrospirae (88.89%)
9 9565 bp 56.23 14.80 94.66
PLM3_60_b1_sep16_scaffold_1575
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
10 9381 bp 56.27 12.26 89.70
PLM3_60_b1_sep16_scaffold_4253
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (70%)
10 9307 bp 57.26 13.01 89.90
PLM3_60_b1_sep16_scaffold_1642
Phylum: Nitrospirae (85.71%)
7 9192 bp 56.48 13.01 88.71
PLM3_60_b1_sep16_scaffold_1699
Phylum: Nitrospirae (54.55%)
11 9017 bp 57.74 13.94 82.41
PLM3_60_b1_sep16_scaffold_5510
Phylum: Nitrospirae (77.78%)
9 8891 bp 58.13 14.15 90.63
PLM3_60_b1_sep16_scaffold_11906
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (78.57%)
14 8837 bp 55.09 14.97 80.63
PLM3_60_b1_sep16_scaffold_2285
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (70%)
10 8751 bp 54.82 15.48 91.29
PLM3_60_b1_sep16_scaffold_1859
Phylum: Nitrospirae (70%)
10 8639 bp 55.57 14.72 75.91
PLM3_60_b1_sep16_scaffold_1910
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (62.5%)
8 8529 bp 59.12 11.87 87.13
PLM3_60_b1_sep16_scaffold_2562
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (77.78%)
9 8484 bp 59.51 12.91 93.46
PLM3_60_b1_sep16_scaffold_1959
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (57.14%)
7 8442 bp 55.59 16.33 79.99
PLM3_60_b1_sep16_scaffold_2049
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (66.67%)
6 8241 bp 58.90 12.63 92.46
PLM3_60_b1_sep16_scaffold_5152
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (88.89%)
9 8223 bp 56.56 15.76 80.34
PLM3_60_b1_sep16_scaffold_4948
Domain: Bacteria (53.85%)
13 8184 bp 54.63 11.14 88.71
PLM3_60_b1_sep16_scaffold_2091
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (75%)
8 8157 bp 57.51 14.56 95.03
PLM3_60_b1_sep16_scaffold_5308
Phylum: Nitrospirae (72.73%)
11 8147 bp 58.91 12.26 88.41
PLM3_60_b1_sep16_scaffold_2110
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (75%)
8 8127 bp 56.64 13.79 81.51
Displaying items 1-50 of 284 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.