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PLM3_60_coex_sep16_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_454_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(665..1282)
DNA (618bp) protein (206aa)
hypothetical protein Tax=Caldimonas manganoxidans RepID=UPI000362D333
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN72967.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM3_60_coex_sep16_scaffold_454_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1292..2416)
DNA (1125bp) protein (375aa)
Radical SAM family protein Tax=Oceanibaculum indicum P24 RepID=K2K6T0_9PROT
MoaA/nifB/pqqE family protein {ECO:0000313|EMBL:EWY38031.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
radical SAM domain protein
PLM3_60_coex_sep16_scaffold_454_3
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2621..3517
DNA (897bp) protein (299aa)
FG-GAP repeat family protein Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KM89_MICAA
Uncharacterized protein {ECO:0000313|EMBL:KJS40017.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
FG-GAP repeat family protein
PLM3_60_coex_sep16_scaffold_454_4
unknown

Not on your lists

3687..4097
DNA (411bp) protein (137aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_454_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4309..5514
DNA (1206bp) protein (402aa)
Monocarboxylate transporter Tax=Oceanibaculum indicum P24 RepID=K2J647_9PROT
Monocarboxylate transporter {ECO:0000313|EMBL:EKE70528.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
major facilitator superfamily transporter
PLM3_60_coex_sep16_scaffold_454_6
unknown

Not on your lists

5511..5636
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_454_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5671..7014
DNA (1344bp) protein (448aa)
Abc1 protein Tax=alpha proteobacterium BAL199 RepID=A8TJC2_9PROT
Abc1 protein {ECO:0000313|EMBL:EDP66727.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
ABC transporter ATP-binding protein
PLM3_60_coex_sep16_scaffold_454_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(7041..7733)
DNA (693bp) protein (231aa)
hypothetical protein Tax=Schlesneria paludicola RepID=UPI00029AC643
hypothetical protein
Tax=CSP1_5_NC10
PLM3_60_coex_sep16_scaffold_454_9
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7848..8069)
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Pseudomonas alcaligenes OT 69 RepID=U3H7Y9_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:EQM68467.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
exported protein of unknown function
PLM3_60_coex_sep16_scaffold_454_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8149..8700)
DNA (552bp) protein (184aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
peroxiredoxin reductase AhpD (EC:1.8.1.-)
alkyl hydroperoxide reductase Tax=Roseomonas sp. B5 RepID=UPI0003162D9A
PLM3_60_coex_sep16_scaffold_454_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8802..9386)
DNA (585bp) protein (195aa)
Alkyl hydroperoxide reductase protein C Tax=Rhodovulum sp. PH10 RepID=J6J7W1_9RHOB
Alkyl hydroperoxide reductase protein C {ECO:0000313|EMBL:EJW12030.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ahpC; alkyl hydroperoxide reductase C
PLM3_60_coex_sep16_scaffold_454_12
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9398..10306
DNA (909bp) protein (303aa)
Transcriptional regulator of oxidative stress Tax=Oceanibaculum indicum P24 RepID=K2JP95_9PROT
Transcriptional regulator of oxidative stress {ECO:0000313|EMBL:EKE76372.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
oxyR2; transcriptional regulator of oxidative stress
PLM3_60_coex_sep16_scaffold_454_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(10448..10876)
DNA (429bp) protein (143aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3_60_coex_sep16_scaffold_454_14
bacterium YEK0313, Bacteria

Not on your lists

comp(10873..12453)
DNA (1581bp) protein (527aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TJ06_9PROT
Fructose dehydrogenase large subunit {ECO:0000313|EMBL:CEJ14284.1}; species="Bacteria.;" source="bacterium YEK0313.;"
choline dehydrogenase
PLM3_60_coex_sep16_scaffold_454_15
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12463..13542)
DNA (1080bp) protein (360aa)
FAD dependent oxidoreductase Tax=Mesorhizobium sp. STM 4661 RepID=M5EX90_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:CCV09707.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_454_16
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13623..14174)
DNA (552bp) protein (184aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2KDC5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIF22480.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
PLM3_60_coex_sep16_scaffold_454_17
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14485..15633
DNA (1149bp) protein (383aa)
pntAA; NAD(P) transhydrogenase subunit alpha part 1 (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITS8_RHOCS
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:KJB96295.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
PLM3_60_coex_sep16_scaffold_454_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15648..16067
DNA (420bp) protein (140aa)
NAD(P) transhydrogenase subunit alpha part 2 Tax=Fodinicurvata sediminis RepID=UPI0003B418B0
pntAB2; NAD(P) transhydrogenase subunit alpha part 2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_454_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16089..17495
DNA (1407bp) protein (469aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
NAD(P) transhydrogenase subunit beta Tax=Oceanibaculum indicum P24 RepID=K2JGX9_9PROT
pntB; NAD(P) transhydrogenase subunit beta
PLM3_60_coex_sep16_scaffold_454_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

17681..18544
DNA (864bp) protein (288aa)
Kelch repeat-containing protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Kelch repeat type 1-containing protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_coex_sep16_scaffold_454_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18526..19071
DNA (546bp) protein (182aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:EGF95602.1}; EC=2.1.1.63 {ECO:0000313|EMBL:EGF95602.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QX48_BREDI
PLM3_60_coex_sep16_scaffold_454_22
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(19104..20453)
DNA (1350bp) protein (450aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Arthrobacter globiformis genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=RBG_16_KB1_OP1_55_9_curated
PLM3_60_coex_sep16_scaffold_454_23
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20631..21200)
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Rhizobium sp. (strain NGR234) RepID=C3MF59_RHISN
LuxR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ACP23896.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
PLM3_60_coex_sep16_scaffold_454_24
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21378..21611)
DNA (234bp) protein (78aa)
30S ribosomal protein S21 Tax=Oceanibaculum indicum P24 RepID=K2J5H8_9PROT
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
rpsU; 30S ribosomal subunit protein S21
PLM3_60_coex_sep16_scaffold_454_25
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21878..22363
DNA (486bp) protein (162aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
Peptide deformylase Tax=Rhodospirillum rubrum RepID=G2TE88_RHORU
peptide deformylase
PLM3_60_coex_sep16_scaffold_454_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22368..23018
DNA (651bp) protein (217aa)
RpsU-divergently transcribed protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUV0_PARL1
rpsU-divergently transcribed protein
RpsU-divergently transcribed protein {ECO:0000313|EMBL:ABS63683.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PLM3_60_coex_sep16_scaffold_454_27
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23015..24139)
DNA (1125bp) protein (375aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
purK; Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) (EC:4.1.1.21)
phosphoribosylaminoimidazole carboxylase Tax=Fodinicurvata sediminis RepID=UPI0003B624D1
PLM3_60_coex_sep16_scaffold_454_28
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24136..24636)
DNA (501bp) protein (167aa)
purE; N5-carboxyaminoimidazole ribonucleotide mutase (EC:5.4.99.18)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Azospirillum brasilense Sp245 RepID=G8AK67_AZOBR
PLM3_60_coex_sep16_scaffold_454_29
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24723..25649)
DNA (927bp) protein (309aa)
Putative uncharacterized protein Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JWY1_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ25089.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
PLM3_60_coex_sep16_scaffold_454_30
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25793..26329
DNA (537bp) protein (179aa)
Acetyltransferase, ribosomal protein N-acetylase Tax=Microvirga sp. WSM3557 RepID=I4YZD0_9RHIZ
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:EIM29322.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
acetyltransferase
Displaying items 1-30 of 38 in total

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