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PLM3_60_coex_sep16_scaffold_2701

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2701_trna_1
unknown

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comp(142..215)
DNA (74bp)
transferRNA Thr
PLM3_60_coex_sep16_scaffold_2701_1
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

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684..1079
DNA (396bp) protein (132aa)
Putative uncharacterized protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7PXP9_CATAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU71502.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM3_60_coex_sep16_scaffold_2701_2
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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1090..1650
DNA (561bp) protein (187aa)
Transcriptional regulator, MarR family Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XD13_NAKMY
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACV79616.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
PLM3_60_coex_sep16_scaffold_2701_3
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1656..2654)
DNA (999bp) protein (333aa)
AAA ATPase Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H866_CELFA
AAA ATPase
AAA ATPase {ECO:0000313|EMBL:AEE44623.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM3_60_coex_sep16_scaffold_2701_4
actinobacterium acAMD-5, Actinobacteria, Actinobacteria, Bacteria

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comp(2638..3258)
DNA (621bp) protein (207aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; species="Bacteria; Actinobacteria.;" source="actinobacterium acAMD-5.;"
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase (Fragment) Tax=Streptomyces sp. Mg1 RepID=B4VDJ1_9ACTO
PLM3_60_coex_sep16_scaffold_2701_5
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3294..5015)
DNA (1722bp) protein (574aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
DNA topoisomerase 1 Tax=Geobacter sulfurreducens RepID=D7AKT1_GEOSK
topA; DNA topoisomerase I
PLM3_60_coex_sep16_scaffold_2701_6
GWF2_OD1_39_13, Uhrbacteria, Parcubacteria, Bacteria

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comp(5012..5455)
DNA (444bp) protein (148aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UT75_ROSS1
Topoisomerase protein {ECO:0000313|EMBL:KKR05071.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_39_13.;"
PLM3_60_coex_sep16_scaffold_2701_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(5775..6503)
DNA (729bp) protein (243aa)
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
potassium transporter Tax=Nocardiopsis potens RepID=UPI000361E53E
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2701_8
unknown

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6753..6920
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2701_9
R_OP11_Woesebacteria_37_10, Woesebacteria, Microgenomates, Bacteria

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7065..7478
DNA (414bp) protein (138aa)
seg 14..32 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_37_10_curated
PLM3_60_coex_sep16_scaffold_2701_10
Streptomyces sp. e14, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(8245..8694)
DNA (450bp) protein (150aa)
Putative uncharacterized protein Tax=Streptomyces sp. e14 RepID=D6K968_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EFF92280.2}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. e14.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2701_11
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(8703..9047)
DNA (345bp) protein (115aa)
Anti-sigma factor antagonist Tax=Frankia sp. CN3 RepID=G6HJ69_9ACTO
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
PLM3_60_coex_sep16_scaffold_2701_12
unknown

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9449..9898
DNA (450bp) protein (150aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2701_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

9895..10806
DNA (912bp) protein (304aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2NFG7_9ACTO
cell envelope-related transcriptional attenuator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2701_14
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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10830..13274
DNA (2445bp) protein (815aa)
DEAD/DEAH box helicase Tax=Frankia sp. BMG5.12 RepID=UPI000382D437
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABW09779.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_2701_15
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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13408..13893
DNA (486bp) protein (162aa)
TIGR00725 family protein Tax=Frankia sp. QA3 RepID=I9A0Z4_9ACTO
TIGR00725 family protein {ECO:0000313|EMBL:EIV93016.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2701_16
unknown

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14011..14673
DNA (663bp) protein (221aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2701_17
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

15268..16074
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEC4_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ41280.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM3_60_coex_sep16_scaffold_2701_18
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16246..17658
DNA (1413bp) protein (471aa)
Tyrosine protein kinase:Serine/threonine protein kinase:PASTA Tax=Thermobifida fusca TM51 RepID=R9F8N5_THEFU
tyrosine protein kinase:Serine/threonine protein kinase:PASTA
Tyrosine protein kinase:Serine/threonine protein kinase:PASTA {ECO:0000313|EMBL:AAZ55079.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
PLM3_60_coex_sep16_scaffold_2701_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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18233..19471
DNA (1239bp) protein (413aa)
Histidine kinase Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A8N7_DEIPD
histidine kinase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3_60_coex_sep16_scaffold_2701_20
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19767..20780)
DNA (1014bp) protein (338aa)
Uncharacterized protein Tax=Streptomyces viridochromogenes Tue57 RepID=L8PIS6_STRVR
Uncharacterized protein {ECO:0000313|EMBL:ELS55928.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
PLM3_60_coex_sep16_scaffold_2701_21
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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comp(20777..21343)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LRU3_ACIC1
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABK52153.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_2701_22
unknown

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comp(21605..21706)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2701_23
unknown

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22100..22210
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 24 items

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