ggKbase home page

PLM3_60_coex_sep16_scaffold_7064

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_7064_1
unknown

Not on your lists

comp(3..191)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_7064_2
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

697..1296
DNA (600bp) protein (200aa)
homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Homoserine kinase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SES8_GEOOG
PLM3_60_coex_sep16_scaffold_7064_3
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1426..3666
DNA (2241bp) protein (747aa)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI000381C36C
Amylo-alpha-16-glucosidase {ECO:0000313|EMBL:EGL83950.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkalibacillus thermarum TA2.A1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_7064_4
Eimeria mitis, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

Not on your lists

comp(4290..5069)
DNA (780bp) protein (260aa)
Uncharacterized protein Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6RD09_NOCCG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDJ33351.1}; species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria mitis.;"
PLM3_60_coex_sep16_scaffold_7064_5
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

comp(5148..5558)
DNA (411bp) protein (137aa)
Uncharacterized protein Tax=Coprococcus sp. CAG:131 RepID=R6M2Y2_9FIRM
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
PLM3_60_coex_sep16_scaffold_7064_6
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5747..6151
DNA (405bp) protein (135aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /; NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602).;"
Transcription termination factor Rho Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2N676_9ACTO
transcription termination factor Rho
PLM3_60_coex_sep16_scaffold_7064_7
Actinomyces graevenitzii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6336..6563
DNA (228bp) protein (76aa)
50S ribosomal protein L31 Tax=Actinomyces timonensis RepID=UPI00030C3277
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces graevenitzii F0530.;"
50S ribosomal protein L31
PLM3_60_coex_sep16_scaffold_7064_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

6591..7640
DNA (1050bp) protein (350aa)
Uncharacterized protein Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GMR0_SELRL
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_7064_9
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7707..8780
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CQ57_DESK7
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
PLM3_60_coex_sep16_scaffold_7064_10
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8777..9607
DNA (831bp) protein (277aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI000372E09D
Methylase of polypeptide chain release factors
Methylase of polypeptide chain release factors {ECO:0000313|EMBL:CCA54085.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 /; JCM 4526 / NBRC 13096 / PD 04745).;"
PLM3_60_coex_sep16_scaffold_7064_11
Gordonia neofelifaecis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9604..10326
DNA (723bp) protein (241aa)
Sua5/YciO/YrdC/YwlC family protein Tax=Frankia sp. CN3 RepID=G6HEI3_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGD56691.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia neofelifaecis NRRL B-59395.;"
PLM3_60_coex_sep16_scaffold_7064_12
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10339..10959
DNA (621bp) protein (207aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036AE612
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP68424.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
protein tyrosine phosphatase
PLM3_60_coex_sep16_scaffold_7064_13
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11017..12285
DNA (1269bp) protein (423aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
glycine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase Tax=Frankia sp. BMG5.12 RepID=UPI00036F670A
PLM3_60_coex_sep16_scaffold_7064_14
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12304..13440
DNA (1137bp) protein (379aa)
Glycosyl transferase, family 4, conserved region Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SES2_GEOOG
family 4 glycosyl transferase
Glycosyl transferase, family 4, conserved region {ECO:0000313|EMBL:ADB76708.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_60_coex_sep16_scaffold_7064_15
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13599..13997
DNA (399bp) protein (133aa)
Putative uncharacterized protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AE27_THECD
Uncharacterized protein {ECO:0000313|EMBL:ETK33865.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_7064_16
actinobacterium SCGC AAA027-L06, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14079..14291
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=actinobacterium SCGC AAA027-L06 RepID=J9H7G2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJX36503.1}; species="Bacteria; Actinobacteria.;" source="actinobacterium SCGC AAA027-L06.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_7064_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14329..15129
DNA (801bp) protein (267aa)
atpB; ATP synthase F0F1 subunit A (EC:3.6.3.14)
F0F1 ATP synthase subunit A Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B4C7B9
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_7064_18
Jonesia denitrificans, Jonesia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15148..15408
DNA (261bp) protein (87aa)
ATP synthase F0, C subunit Tax=Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) RepID=C7QZC4_JONDD
ATP synthase F0 subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; species="Bacteria; Actinobacteria; Micrococcales; Jonesiaceae; Jonesia.;" source="Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134); (Listeria denitrificans).;"
PLM3_60_coex_sep16_scaffold_7064_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15419..16003
DNA (585bp) protein (195aa)
F0F1 ATP synthase subunit B Tax=Saccharomonospora saliphila RepID=UPI0003728C44
ATP synthase F0 subcomplex B subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_7064_20
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15990..16820
DNA (831bp) protein (277aa)
ATP synthase subunit delta Tax=Frankia sp. CN3 RepID=G6HEJ0_9ACTO
ATP synthase F1 subunit delta
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_7064_21
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16879..18519
DNA (1641bp) protein (547aa)
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
ATP synthase subunit alpha Tax=Frankia alni (strain ACN14a) RepID=ATPA_FRAAA
PLM3_60_coex_sep16_scaffold_7064_22
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18522..19409
DNA (888bp) protein (296aa)
ATP synthase gamma chain Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B5X9_FRADG
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
ATP synthase subunit gamma
PLM3_60_coex_sep16_scaffold_7064_23
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

19751..20773
DNA (1023bp) protein (341aa)
ATP synthase subunit beta Tax=Frankia RepID=F8B5X8_FRADG
ATP synthase subunit beta
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_60_coex_sep16_scaffold_7064_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

20776..21174
DNA (399bp) protein (133aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003649B64
ATP synthase F1, epsilon subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_7064_25
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21171..21986)
DNA (816bp) protein (272aa)
Transcriptional regulator, IclR family Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q5S8_CATAD
IclR family transcriptional regulator {ECO:0000313|EMBL:ETK36654.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
IclR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_7064_26
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21983..22660)
DNA (678bp) protein (226aa)
Dihydroxyacetone kinase, L subunit Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B9Y6_STRRD
dihydroxyacetone kinase subunit DhaL
Dihydroxyacetone kinase subunit DhaL {ECO:0000313|EMBL:ETK36653.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM3_60_coex_sep16_scaffold_7064_27
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22785..23189)
DNA (405bp) protein (135aa)
hypothetical protein Tax=Anaeromusa acidaminophila RepID=UPI000369B37B
dihydroxyacetone kinase, phosphotransfer subunit
Dihydroxyacetone kinase, phosphotransfer subunit {ECO:0000313|EMBL:AHY46310.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3_60_coex_sep16_scaffold_7064_28
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(23293..24294)
DNA (1002bp) protein (334aa)
dihydroxyacetone kinase DhaK subunit (EC:2.7.1.121 2.7.1.29)
Dihydroxyacetone kinase, DhaK subunit Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J6Q0_NOSP7
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_7064_29
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24329..24562)
DNA (234bp) protein (78aa)
Putative glycerol uptake facilitator protein Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q826J3_STRAW
transport integral membrane protein
Putative glycerol uptake facilitator protein {ECO:0000313|EMBL:BAC74911.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
Displaying 29 items

View Taxonomy