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PLM3_60_coex_sep16_scaffold_2399

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2399_1
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..714)
DNA (714bp) protein (238aa)
2-methylthioadenine synthase Tax=Bradyrhizobium elkanii RepID=UPI0003051E4A
2-methylthioadenine synthase {ECO:0000313|EMBL:KJC43026.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
MiaB-like tRNA modifying enzyme
PLM3_60_coex_sep16_scaffold_2399_2
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(716..1588)
DNA (873bp) protein (291aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEH4_9BRAD
PLM3_60_coex_sep16_scaffold_2399_3
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1808..2509
DNA (702bp) protein (234aa)
Transcriptional regulator, effector-binding domain/component Tax=Bradyrhizobium sp. WSM471 RepID=H5YDZ1_9BRAD
Transcriptional regulator, effector-binding domain/component {ECO:0000313|EMBL:EHQ99858.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
transcription activator, effector binding
PLM3_60_coex_sep16_scaffold_2399_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2514..3218
DNA (705bp) protein (235aa)
Uncharacterized protein Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07UV2_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ04282.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
PLM3_60_coex_sep16_scaffold_2399_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3368..4495)
DNA (1128bp) protein (376aa)
Putative Zn-dependent hydrolase of beta-lactamase Tax=Bradyrhizobium sp. YR681 RepID=J3CQP3_9BRAD
Membrane protein {ECO:0000313|EMBL:KJC61363.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
membrane protein
PLM3_60_coex_sep16_scaffold_2399_6
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4568..5176)
DNA (609bp) protein (203aa)
Rrf2-linked NADH-flavin reductase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TWL4_TISMK
Rrf2-linked NADH-flavin reductase {ECO:0000313|EMBL:KIV64469.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
NAD-dependent epimerase/dehydratase
PLM3_60_coex_sep16_scaffold_2399_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5279..5689
DNA (411bp) protein (137aa)
MarR family transcriptional regulator Tax=Rhodanobacter fulvus Jip2 RepID=I4VLU3_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL88184.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative transcriptional regulator
PLM3_60_coex_sep16_scaffold_2399_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6178..7728
DNA (1551bp) protein (517aa)
Signal recognition particle protein Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SNV9_NITWN
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
signal recognition particle protein
PLM3_60_coex_sep16_scaffold_2399_9
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7897..8292
DNA (396bp) protein (132aa)
30S ribosomal protein S16 Tax=Afipia sp. 1NLS2 RepID=D6V147_9BRAD
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
rpsP; 30S ribosomal protein S16
PLM3_60_coex_sep16_scaffold_2399_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8311..8838
DNA (528bp) protein (176aa)
Ribosome maturation factor RimM Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC69_9BRAD
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
rimM; 16S rRNA-processing protein RimM
PLM3_60_coex_sep16_scaffold_2399_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8841..9605
DNA (765bp) protein (255aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
tRNA (guanine-N(1)-)-methyltransferase Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJ04_RHOPX
PLM3_60_coex_sep16_scaffold_2399_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9721..10116
DNA (396bp) protein (132aa)
50S ribosomal protein L19 Tax=Rhodopseudomonas palustris RepID=RL19_RHOP2
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Displaying 12 items

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