ggKbase home page

PLM3_60_coex_sep16_scaffold_3188

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3188_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..506)
DNA (504bp) protein (168aa)
translation elongation factor tu (EC:2.7.7.4)
translation elongation factor 1A (EF-1A/EF-Tu); K02358 elongation factor Tu bin=bin7_NC10_sister species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_3188_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(538..2649)
DNA (2112bp) protein (704aa)
Elongation factor G bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA-3; elongation factor G
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_3188_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(2764..3231)
DNA (468bp) protein (156aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsG; 30S ribosomal protein S7
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3188_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(3235..3612)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3188_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3700..6915)
DNA (3216bp) protein (1072aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3188_6
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

7116..7373
DNA (258bp) protein (86aa)
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
PLM3_60_coex_sep16_scaffold_3188_7
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

7419..7589
DNA (171bp) protein (57aa)
Uncharacterized protein Tax=Aggregatibacter actinomycetemcomitans serotype d str. I63B RepID=G4A214_AGGAC
Tax=RBG_13_Aminicenantes_63_10_curated
PLM3_60_coex_sep16_scaffold_3188_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7948..11970)
DNA (4023bp) protein (1341aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3188_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12027..12416)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplL; 50S ribosomal subunit protein L7/L12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3188_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12437..13111)
DNA (675bp) protein (225aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3188_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(13122..13841)
DNA (720bp) protein (240aa)
50S ribosomal protein L1 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplA; 50S ribosomal protein L1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3188_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13851..14270)
DNA (420bp) protein (140aa)
50S ribosomal protein L11 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3188_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14267..14818)
DNA (552bp) protein (184aa)
Transcription antitermination protein nusG bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription antitermination protein nusG
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3188_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14820..15029)
DNA (210bp) protein (70aa)
Preprotein translocase, SecE subunit bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_3188_trna_1
unknown

Not on your lists

comp(15067..15140)
DNA (74bp)
transferRNA Trp
PLM3_60_coex_sep16_scaffold_3188_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(15158..15307)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L33
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_3188_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15311..15841)
DNA (531bp) protein (177aa)
Elongation factor Tu bin=GWF2_Methylomirabilis_70_14 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tufB; Elongation factor Tu (EF-Tu)
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 17 items

View Taxonomy