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PLM3_60_coex_sep16_scaffold_8049

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_8049_trna_1
unknown

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comp(8..80)
DNA (73bp)
transferRNA Thr
PLM3_60_coex_sep16_scaffold_8049_1
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(103..822)
DNA (720bp) protein (240aa)
23S rRNA methyltransferase {ECO:0000313|EMBL:CCQ93772.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCQ93772.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
23S rRNA methyltransferase Tax=Clostridium ultunense Esp RepID=M1ZIJ6_9CLOT
RNA methyltransferase, trmh family
PLM3_60_coex_sep16_scaffold_8049_2
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1170..2609)
DNA (1440bp) protein (480aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Cysteine--tRNA ligase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RNB3_ALLVD
PLM3_60_coex_sep16_scaffold_8049_3
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2632..3126)
DNA (495bp) protein (165aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00107}; Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000255|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000255|HAMAP-Rule:MF_00107};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=ISPF_BORPD
PLM3_60_coex_sep16_scaffold_8049_4
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(3123..3821)
DNA (699bp) protein (233aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WD65_9ACTO
ispD; putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PLM3_60_coex_sep16_scaffold_8049_5
Mycobacterium neoaurum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3869..4348)
DNA (480bp) protein (160aa)
CarD family transcriptional regulator Tax=Mycobacterium neoaurum VKM Ac-1815D RepID=V5XJA2_MYCNE
CarD family transcriptional regulator
CarD family transcriptional regulator {ECO:0000313|EMBL:AHC27584.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium neoaurum VKM Ac-1815D.;"
PLM3_60_coex_sep16_scaffold_8049_6
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(4454..5494)
DNA (1041bp) protein (347aa)
DNA integrity scanning protein DisA Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CHQ1_STRBB
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00207481}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
PLM3_60_coex_sep16_scaffold_8049_7
unknown

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5775..5957
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_8049_8
Streptomyces griseoaurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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6002..7849
DNA (1848bp) protein (616aa)
RNA polymerase sigma factor Tax=Streptomyces griseoaurantiacus M045 RepID=F3NGZ7_9ACTO
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoaurantiacus M045.;"
sigma-70 family RNA polymerase
PLM3_60_coex_sep16_scaffold_8049_9
Oryza punctata, Oryza, Poales, commelinids, Streptophyta, Viridiplantae

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7842..8990
DNA (1149bp) protein (383aa)
Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC11G11800.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza.;" source="Oryza punctata (Red rice).;"
Displaying 10 items

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