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PLM3_60_coex_sep16_scaffold_1408

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1408_1
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(2..214)
DNA (213bp) protein (71aa)
Polyphosphate kinase 2, predicted Tax=Rhodopirellula sp. SWK7 RepID=M5SWA2_9PLAN
polyphosphate kinase 2, PA0141 family
Tax=CG_Arma_01
PLM3_60_coex_sep16_scaffold_1408_2
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(230..1273)
DNA (1044bp) protein (348aa)
small conductance mechanosensitive ion channel (MscS) family protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
mechanosensitive ion channel MscS
Tax=RBG_13_Planctomycetes_46_10_curated
PLM3_60_coex_sep16_scaffold_1408_3
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1447..1863
DNA (417bp) protein (139aa)
hypothetical protein Tax=Longispora albida RepID=UPI00037534B1
Lyase {ECO:0000313|EMBL:KIF43707.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
lyase
PLM3_60_coex_sep16_scaffold_1408_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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1919..3526
DNA (1608bp) protein (536aa)
Multi-sensor hybrid histidine kinase bin=GWC2_Chloroflexi_73_18 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
multi-sensor hybrid histidine kinase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1408_5
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3698..3919
DNA (222bp) protein (74aa)
translation initiation factor IF-1 Tax=Catelliglobosispora koreensis RepID=UPI00035E35F0
translation initiation factor 1
Translation initiation factor IF-1 {ECO:0000255|HAMAP-Rule:MF_00075}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_1408_6
Actinomyces neuii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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3928..4041
DNA (114bp) protein (38aa)
50S ribosomal protein L36 Tax=Actinomyces neuii BVS029A5 RepID=K0YUN0_9ACTO
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces neuii BVS029A5.;"
50S ribosomal protein L36
PLM3_60_coex_sep16_scaffold_1408_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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4071..4451
DNA (381bp) protein (127aa)
30S ribosomal protein S13 Tax=Frankia sp. (strain EuI1c) RepID=E3J389_FRASU
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_1408_8
Streptomyces ghanaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4462..4860
DNA (399bp) protein (133aa)
30S ribosomal protein S11 Tax=Streptomyces scabrisporus RepID=UPI00037B14C4
SSU ribosomal protein S11p
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ghanaensis ATCC 14672.;"
PLM3_60_coex_sep16_scaffold_1408_9
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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4877..5503
DNA (627bp) protein (209aa)
30S ribosomal protein S4 Tax=Actinomadura madurae LIID-AJ290 RepID=U2MHE6_9ACTO
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_60_coex_sep16_scaffold_1408_10
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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5566..6498
DNA (933bp) protein (311aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
DNA-directed RNA polymerase subunit alpha Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y545_THEBD
DNA-directed RNA polymerase subunit alpha
PLM3_60_coex_sep16_scaffold_1408_11
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6505..7479
DNA (975bp) protein (325aa)
50S ribosomal protein L17 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LRP9_ACIC1
50S ribosomal protein L17 {ECO:0000256|RuleBase:RU000661}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
50S ribosomal protein L17
PLM3_60_coex_sep16_scaffold_1408_12
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7485..8279
DNA (795bp) protein (265aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A Tax=Frankia sp. QA3 RepID=I9A3W8_9ACTO
PLM3_60_coex_sep16_scaffold_1408_13

Not on your lists

comp(8239..8754)
DNA (516bp) protein (172aa)
Glycosyl transferase, group 1/2 family protein (Fragment) Tax=Leptospirillum sp. Group II 'C75' RepID=U4QUE8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKL97873.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_60_coex_sep16_scaffold_1408_14
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(8751..9230)
DNA (480bp) protein (160aa)
hypothetical protein Tax=cyanobacterium PCC 7702 RepID=UPI00036FADC8
Serine acetyltransferase {ECO:0000313|EMBL:KIF19870.1}; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1408_15
unknown

Not on your lists

9310..9627
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1408_16
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


9758..10219
DNA (462bp) protein (154aa)
50S ribosomal protein L13 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LRQ5_ACIC1
rplM; 50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_1408_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


10234..10632
DNA (399bp) protein (133aa)
30S ribosomal protein S9 Tax=Saccharomonospora halophila RepID=UPI00036AFD4A
30S ribosomal protein S9
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1408_18
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10653..12023
DNA (1371bp) protein (457aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase Tax=Saccharomonospora marina XMU15 RepID=H5X776_9PSEU
PLM3_60_coex_sep16_scaffold_1408_19
Streptomyces griseoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12072..13907
DNA (1836bp) protein (612aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoflavus Tu4000.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Tax=Streptomyces griseoflavus Tu4000 RepID=D9XVD8_9ACTO
putative L-glutamine-D-fructose-6-phosphate amidotransferase
PLM3_60_coex_sep16_scaffold_1408_20
unknown

Not on your lists

13913..14245
DNA (333bp) protein (111aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1408_21
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

14242..14661
DNA (420bp) protein (140aa)
holo-acyl-carrier-protein synthase (EC:2.7.8.7)
4''''-phosphopantetheinyl transferase Tax=Sphingomonas melonis RepID=UPI00037C7E01
Tax=BJP_IG2102_Coriobacteriales_64_17
PLM3_60_coex_sep16_scaffold_1408_22
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14658..16280
DNA (1623bp) protein (541aa)
carbohydrate kinase Tax=Nocardiopsis halotolerans RepID=UPI00034867CC
carbohydrate kinase
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:ADH70565.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
PLM3_60_coex_sep16_scaffold_1408_23
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16273..17466
DNA (1194bp) protein (398aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
alanine racemase Tax=Streptomyces violaceoniger RepID=UPI0003C7611E
PLM3_60_coex_sep16_scaffold_1408_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

17466..18653
DNA (1188bp) protein (396aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI00036991ED
lipase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1408_25
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

Not on your lists

18660..19634
DNA (975bp) protein (325aa)
hypothetical protein Tax=Brachymonas chironomi RepID=UPI000373B52B
peptidase S58 family protein
Tax=RBG_13_Actinobacteria_55_18_curated
PLM3_60_coex_sep16_scaffold_1408_26
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19636..19854
DNA (219bp) protein (73aa)
FmdB family transcriptional regulator Tax=Salinispora arenicola RepID=UPI000363961A
FmdB family regulatory protein
Putative regulatory protein, FmdB family {ECO:0000313|EMBL:ABV96362.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM3_60_coex_sep16_scaffold_1408_27
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(19909..22203)
DNA (2295bp) protein (765aa)
Uncharacterized protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QHH8_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY58422.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM3_60_coex_sep16_scaffold_1408_28
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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22395..22655
DNA (261bp) protein (87aa)
Phage DNA polymerase-related protein Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KXL9_THERP
phage DNA polymerase-like protein
Tax=RBG_16_Actinobacteria_70_17_curated
Displaying 28 items

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