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PLM3_60_coex_sep16_scaffold_678

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_678_1
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(2..391)
DNA (390bp) protein (130aa)
ATP synthase epsilon chain Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y730_THEBD
ATP synthase F1 subunit epsilon
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_678_2
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(394..1845)
DNA (1452bp) protein (484aa)
ATP synthase subunit beta Tax=Frankia RepID=F8B5X8_FRADG
ATP synthase subunit beta
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_678_3
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1852..2739)
DNA (888bp) protein (296aa)
ATP synthase F0F1 subunit gamma (EC:3.6.3.15)
F0F1 ATP synthase subunit gamma Tax=Actinoalloteichus spitiensis RepID=UPI00037BCD40
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
PLM3_60_coex_sep16_scaffold_678_4
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2746..4392)
DNA (1647bp) protein (549aa)
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
ATP synthase subunit alpha Tax=Frankia alni (strain ACN14a) RepID=ATPA_FRAAA
PLM3_60_coex_sep16_scaffold_678_5

Not on your lists

comp(4518..5336)
DNA (819bp) protein (273aa)
atpH; ATP synthase F0F1 subunit delta (EC:3.6.3.14)
F0F1 ATP synthase subunit delta Tax=Streptomyces niveus NCIMB 11891 RepID=V6KKN6_STRNV
Uncharacterized protein {ECO:0000313|EMBL:KGA16340.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
PLM3_60_coex_sep16_scaffold_678_6
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5323..5916)
DNA (594bp) protein (198aa)
ATP synthase subunit b Tax=Actinoplanes sp. N902-109 RepID=R4LZA4_9ACTO
atpF; ATP synthase F0 subunit B
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM3_60_coex_sep16_scaffold_678_7
Jonesia denitrificans, Jonesia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5930..6181)
DNA (252bp) protein (84aa)
ATP synthase F0, C subunit Tax=Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) RepID=C7QZC4_JONDD
ATP synthase F0 subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; species="Bacteria; Actinobacteria; Micrococcales; Jonesiaceae; Jonesia.;" source="Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134); (Listeria denitrificans).;"
PLM3_60_coex_sep16_scaffold_678_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(6201..6992)
DNA (792bp) protein (264aa)
ATP synthase subunit a Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WHK0_ACTMD
ATP synthase F0 subunit A
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_678_9
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7003..7215)
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SHI4_NOCSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL81269.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_60_coex_sep16_scaffold_678_10
Nonomuraea sp. ATCC 39727, Nonomuraea, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7231..7644)
DNA (414bp) protein (138aa)
I protein Tax=Nonomuraea sp. ATCC 39727 RepID=Q66V94_9ACTO
I protein {ECO:0000313|EMBL:AAU08234.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Nonomuraea.;" source="Nonomuraea sp. ATCC 39727.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_678_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(7765..8877)
DNA (1113bp) protein (371aa)
Glycosyl transferase family 4 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AE28_THECD
glycosyl transferase family 4
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_678_12
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8890..9486)
DNA (597bp) protein (199aa)
protein-tyrosine-phosphatase (EC:3.1.3.48)
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI00037B6186
Uncharacterized protein {ECO:0000313|EMBL:CAJ60686.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_60_coex_sep16_scaffold_678_13
Corynebacterium urealyticum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9476..10156)
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Corynebacterium urealyticum RepID=M4KG25_9CORY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ04667.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109).;"
PLM3_60_coex_sep16_scaffold_678_14
Streptomyces sp. SM8, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10170..11150)
DNA (981bp) protein (327aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI000372E09D
Uncharacterized protein {ECO:0000313|EMBL:EKC95195.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. SM8.;"
HemK family modification methylase
PLM3_60_coex_sep16_scaffold_678_15
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11147..12223)
DNA (1077bp) protein (359aa)
peptide chain release factor 1 Tax=Streptomyces sulphureus RepID=UPI000364C3A9
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3_60_coex_sep16_scaffold_678_16
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12225..13205)
DNA (981bp) protein (327aa)
Uncharacterized protein Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GMR0_SELRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL82047.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
PLM3_60_coex_sep16_scaffold_678_17
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists


comp(13226..13447)
DNA (222bp) protein (74aa)
50S ribosomal protein L31 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M176_ACIFD
50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
PLM3_60_coex_sep16_scaffold_678_18
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13531..15594)
DNA (2064bp) protein (688aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
Transcription termination factor Rho Tax=Streptomyces sp. HPH0547 RepID=S3B1M7_9ACTO
rho; transcription termination factor Rho
PLM3_60_coex_sep16_scaffold_678_19
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(16012..18261)
DNA (2250bp) protein (750aa)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI000381C36C
neutral invertase
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3_60_coex_sep16_scaffold_678_20
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18356..19264)
DNA (909bp) protein (303aa)
homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Homoserine kinase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SES8_GEOOG
PLM3_60_coex_sep16_scaffold_678_21
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19330..20391)
DNA (1062bp) protein (354aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
threonine synthase Tax=Streptomyces sp. BoleA5 RepID=UPI000361A57F
threonine synthase
PLM3_60_coex_sep16_scaffold_678_22
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(20388..21695)
DNA (1308bp) protein (436aa)
Homoserine dehydrogenase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B5Z3_FRADG
homoserine dehydrogenase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_678_23
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21840..22640
DNA (801bp) protein (267aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003644E85
Uncharacterized protein {ECO:0000313|EMBL:EQD87238.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_678_24
GWC2_SYX_53_9_curated, Bacteria

Not on your lists


comp(22807..24495)
DNA (1689bp) protein (563aa)
arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase Tax=Frankia sp. BMG5.12 RepID=UPI000371A468
Tax=GWC2_SYX_53_9_curated
PLM3_60_coex_sep16_scaffold_678_25
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24492..24893)
DNA (402bp) protein (134aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI0003708308
Histidine kinase {ECO:0000313|EMBL:KIH97315.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
response regulator receiver protein
PLM3_60_coex_sep16_scaffold_678_26
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25300..26184
DNA (885bp) protein (295aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NTM2_STRVO
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEM83380.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
Displaying 26 items

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