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PLM3_60_coex_sep16_scaffold_726

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_726_1

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1..711
DNA (711bp) protein (237aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase Tax=Rhodospirillum photometricum DSM 122 RepID=H6SRE3_RHOPH
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KGA13972.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
PLM3_60_coex_sep16_scaffold_726_2
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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687..1394
DNA (708bp) protein (236aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:BAN02992.1}; EC=2.5.1.54 {ECO:0000313|EMBL:BAN02992.1};; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A2L1_9ACTN
PLM3_60_coex_sep16_scaffold_726_3
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1394..1696
DNA (303bp) protein (101aa)
hypothetical protein Tax=Longispora albida RepID=UPI000367BAC8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW92674.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM3_60_coex_sep16_scaffold_726_4
unknown

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comp(1717..1941)
DNA (225bp) protein (75aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_726_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1934..2365)
DNA (432bp) protein (144aa)
Ribonuclease VapC Tax=Thiothrix nivea DSM 5205 RepID=I3BSF1_9GAMM
PIN domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_726_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2352..2615)
DNA (264bp) protein (88aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
CopG family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_60_coex_sep16_scaffold_726_7
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2724..3107
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Streptomyces davawensis JCM 4913 RepID=K4QSY4_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK25456.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM3_60_coex_sep16_scaffold_726_8
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3149..4549)
DNA (1401bp) protein (467aa)
Lysine 2,3-aminomutase Tax=Cystobacter fuscus DSM 2262 RepID=S9PN65_9DELT
Lysine 2,3-aminomutase {ECO:0000313|EMBL:EPX64461.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
kamA1; putative L-lysine 2,3-aminomutase
PLM3_60_coex_sep16_scaffold_726_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(4683..6542)
DNA (1860bp) protein (620aa)
Sensory box/GGDEF Tax=Actinoplanes sp. N902-109 RepID=R4LSR1_9ACTO
Sensory box/GGDEF
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_726_10
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6881..8047
DNA (1167bp) protein (389aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0003136FCB
membrane-bound lytic murein transglycosylase B-like protein
Membrane-bound lytic murein transglycosylase B-like protein {ECO:0000313|EMBL:ACU34637.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM3_60_coex_sep16_scaffold_726_11
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(8060..9259)
DNA (1200bp) protein (400aa)
hypothetical protein Tax=Geitlerinema sp. PCC 7105 RepID=UPI00035FFB12
Uncharacterized protein {ECO:0000313|EMBL:GAL84241.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
PLM3_60_coex_sep16_scaffold_726_12
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(9402..10097)
DNA (696bp) protein (232aa)
LuxR family transcriptional regulator Tax=Salinispora pacifica RepID=UPI00036DB07E
regulatory protein LuxR
Regulatory protein LuxR {ECO:0000313|EMBL:AEB47209.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM3_60_coex_sep16_scaffold_726_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(10094..11422)
DNA (1329bp) protein (443aa)
Putative signal transduction histidine kinase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F101_CONWI
signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:ADB50077.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_726_14
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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11569..12975
DNA (1407bp) protein (469aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00037DFD59
phage shock protein C, PspC
Phage shock protein C, PspC {ECO:0000313|EMBL:ABV99997.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM3_60_coex_sep16_scaffold_726_15
unknown

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12975..13328
DNA (354bp) protein (118aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_726_16
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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13368..14126
DNA (759bp) protein (253aa)
ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE {ECO:0000313|EMBL:AEV83309.1}; EC=2.1.1.- {ECO:0000313|EMBL:AEV83309.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8RZA9_ACTS5
PLM3_60_coex_sep16_scaffold_726_17
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(14123..15031)
DNA (909bp) protein (303aa)
ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Ferrochelatase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIA9_THET1
PLM3_60_coex_sep16_scaffold_726_18
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(15099..16166)
DNA (1068bp) protein (356aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Uroporphyrinogen decarboxylase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIA8_THET1
PLM3_60_coex_sep16_scaffold_726_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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16272..16841
DNA (570bp) protein (190aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZC3_CONWI
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ADB51888.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_726_20
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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16892..18127
DNA (1236bp) protein (412aa)
Major facilitator superfamily MFS_1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A9R6_THECD
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACY98752.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_726_21
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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18566..19258
DNA (693bp) protein (231aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXH1_RUBXD
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABG03907.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_726_22
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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19251..19952
DNA (702bp) protein (234aa)
hypothetical protein Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI0003680DCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH94667.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_60_coex_sep16_scaffold_726_23
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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20020..20568
DNA (549bp) protein (183aa)
Uncharacterized protein Tax=Streptomyces albulus CCRC 11814 RepID=S9YX14_STRA9
Uncharacterized protein {ECO:0000313|EMBL:EXU85678.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus PD-1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_726_24
unknown

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20745..21329
DNA (585bp) protein (195aa)

This feature has no annotations

Displaying 24 items

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