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PLM3_30_b2_sep16_scaffold_3927

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_3927_1
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(1..876)
DNA (876bp) protein (292aa)
RND family efflux transporter, MFP subunit Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C2F6_DESTA
RND family efflux transporter, MFP subunit
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_30_b2_sep16_scaffold_3927_2
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(873..1346)
DNA (474bp) protein (158aa)
Transcriptional regulator, MarR family Tax=Coxiella burnetii RepID=A9KG43_COXBN
Transcriptional regulator SlyA {ECO:0000313|EMBL:KFZ90916.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
slyA; transcriptional regulator, MarR family
PLM3_30_b2_sep16_scaffold_3927_3
unknown

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comp(1411..1695)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_3927_4
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(1710..2828)
DNA (1119bp) protein (373aa)
4-amino-4-deoxy-L-arabinose transferase/PMT family glycosyltransferase Tax=Verrucomicrobium spinosum RepID=UPI0001744955
glycosyl transferase 39
Tax=GWF2_Lentisphaerae_49_21_curated
PLM3_30_b2_sep16_scaffold_3927_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2988..3494
DNA (507bp) protein (169aa)
NusA antitermination factor Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ1_9BACT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nusA; transcription elongation factor
PLM3_30_b2_sep16_scaffold_3927_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3433..4083
DNA (651bp) protein (217aa)
NusA antitermination factor Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ1_9BACT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nusA; transcription elongation factor
PLM3_30_b2_sep16_scaffold_3927_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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4139..6376
DNA (2238bp) protein (746aa)
Translation initiation factor IF-2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ2_9BACT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
infB; translation initiation factor 2, GTPase
PLM3_30_b2_sep16_scaffold_3927_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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6425..6775
DNA (351bp) protein (117aa)
Ribosome-binding factor A Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ3_9BACT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ribosome-binding factor A
PLM3_30_b2_sep16_scaffold_3927_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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6891..7883
DNA (993bp) protein (331aa)
Phosphoesterase RecJ domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ4_9BACT
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:EDY20595.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoesterase RecJ domain-containing protein
PLM3_30_b2_sep16_scaffold_3927_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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7945..8427
DNA (483bp) protein (161aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tRNA pseudouridine synthase B Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ5_9BACT
truB; pseudouridine synthase
PLM3_30_b2_sep16_scaffold_3927_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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8720..9652
DNA (933bp) protein (311aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FMN adenylyltransferase / riboflavin kinase (EC:2.7.1.26 2.7.7.2)
riboflavin biosynthesis protein RibF Tax=Verrucomicrobium spinosum RepID=UPI0001745B5F
PLM3_30_b2_sep16_scaffold_3927_12
unknown

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comp(9673..10029)
DNA (357bp) protein (119aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_3927_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(10040..10528)
DNA (489bp) protein (163aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XK22_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59845.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
Displaying 13 items

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