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PLM3-1_50_b1_sep16_scaffold_552

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_552_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2..553
DNA (552bp) protein (184aa)
pdxS; pyridoxal biosynthesis lyase (EC:4.-.-.-)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Pyridoxal biosynthesis lyase PdxS Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH5_NITGG
PLM3-1_50_b1_sep16_scaffold_552_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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550..1173
DNA (624bp) protein (208aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamine amidotransferase subunit PdxT Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILX5_NITGG
pdxT; glutamine amidotransferase subunit PdxT
PLM3-1_50_b1_sep16_scaffold_552_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1219..2634)
DNA (1416bp) protein (472aa)
aconitase (EC:4.2.1.3)
Aconitase {ECO:0000313|EMBL:AIF83302.1}; EC=4.2.1.3 {ECO:0000313|EMBL:AIF83302.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Aconitate hydratase Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A4S4_NITMS
PLM3-1_50_b1_sep16_scaffold_552_4

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comp(2585..3568)
DNA (984bp) protein (328aa)
aconitase (EC:4.2.1.3)
Aconitate hydratase Tax=uncultured archaeon RepID=I3RKZ1_9ARCH
Aconitate hydratase {ECO:0000313|EMBL:AFK25001.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
PLM3-1_50_b1_sep16_scaffold_552_trna_3
unknown

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comp(3673..3789)
DNA (117bp)
transferRNA Pro
PLM3-1_50_b1_sep16_scaffold_552_trna_1
unknown

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3901..3974
DNA (74bp)
transferRNA Thr
PLM3-1_50_b1_sep16_scaffold_552_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4111..5934)
DNA (1824bp) protein (608aa)
pox; pyruvate dehydrogenase/pyruvate oxidase (EC:1.2.3.3)
Putative pyruvate dehydrogenase/ pyruvate oxidase {ECO:0000313|EMBL:AFU59573.1}; EC=1.2.3.3 {ECO:0000313|EMBL:AFU59573.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative pyruvate dehydrogenase/ pyruvate oxidase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK18_NITGG
PLM3-1_50_b1_sep16_scaffold_552_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6255..7841
DNA (1587bp) protein (529aa)
transketolase, beta subunit (EC:2.2.1.1)
Transketolase, beta subunit {ECO:0000313|EMBL:AIF82683.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AIF82683.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Transketolase, N-terminal subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG57_NITGG
PLM3-1_50_b1_sep16_scaffold_552_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7828..8802
DNA (975bp) protein (325aa)
tktB; transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, C-terminal subunit {ECO:0000313|EMBL:AFU60392.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AFU60392.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Transketolase, C-terminal subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IML5_NITGG
PLM3-1_50_b1_sep16_scaffold_552_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8799..9461
DNA (663bp) protein (221aa)
tal; transaldolase (EC:2.2.1.2)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Probable transaldolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG0_NITGG
PLM3-1_50_b1_sep16_scaffold_552_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9499..11079)
DNA (1581bp) protein (527aa)
Putative von Willebrand factor type A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP27_NITGG
von Willebrand factor type A
Putative von Willebrand factor type A {ECO:0000313|EMBL:AFU60394.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_552_10
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(11084..11890)
DNA (807bp) protein (269aa)
Putative NorQ like ATPase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJW3_NITGG
NorQ like ATPase
Tax=RBG_13_Bathyarchaeota_38_9_curated
PLM3-1_50_b1_sep16_scaffold_552_11
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11938..13296)
DNA (1359bp) protein (453aa)
Putative von Willebrand factor type A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INC1_NITGG
uncharacterized protein with a von Willebrand factor type A (vWA) domain
Uncharacterized protein with a von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:AIF84284.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_552_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13283..14971)
DNA (1689bp) protein (563aa)
Putative Mg-chelatase subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGX7_NITGG
Mg-chelatase subunit
Putative Mg-chelatase subunit {ECO:0000313|EMBL:AFU59115.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_552_13
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15066..15653
DNA (588bp) protein (196aa)
30S ribosomal protein S13 Tax=Candidatus Nitrososphaera gargensis RepID=K0IKR3_NITGG
SSU ribosomal protein S13P
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_552_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15662..16165
DNA (504bp) protein (168aa)
30S ribosomal protein S4p Tax=Candidatus Nitrososphaera gargensis RepID=K0IJ31_NITGG
30S ribosomal protein S4 {ECO:0000256|SAAS:SAAS00016650}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
rps4p; 30S ribosomal protein S4p
PLM3-1_50_b1_sep16_scaffold_552_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16176..17144)
DNA (969bp) protein (323aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INC2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59119.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_552_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17331..19094
DNA (1764bp) protein (588aa)
glmS1; glucosamine-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glucosamine-fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:AFU59120.1}; EC=2.6.1.16 {ECO:0000313|EMBL:AFU59120.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glucosamine-fructose-6-phosphate aminotransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGY0_NITGG
PLM3-1_50_b1_sep16_scaffold_552_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19131..20225)
DNA (1095bp) protein (365aa)
UPF0284 protein Ngar_c14260 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJC7_NITGG
TIGR00303 family protein
UPF0284 protein NTE_01557 {ECO:0000256|HAMAP-Rule:MF_01086}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_552_18
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20229..20798)
DNA (570bp) protein (190aa)
Zn-dependent hydrolase, glyoxylase (EC:3.1.2.6)
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AIF83619.1}; EC=3.1.2.6 {ECO:0000313|EMBL:AIF83619.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Beta-lactamase-like protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAL2_NITGG
PLM3-1_50_b1_sep16_scaffold_552_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20800..21228)
DNA (429bp) protein (143aa)
NAD(P)H-hydrate epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; EC=5.1.99.6 {ECO:0000256|HAMAP-Rule:MF_01966};; NAD(P)HX epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
NAD(P)H-hydrate epimerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF08_NITGG
carbohydrate kinase
PLM3-1_50_b1_sep16_scaffold_552_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21201..21455)
DNA (255bp) protein (85aa)
NAD(P)H-hydrate epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; EC=5.1.99.6 {ECO:0000256|HAMAP-Rule:MF_01966};; NAD(P)HX epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
NAD(P)H-hydrate epimerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF08_NITGG
carbohydrate kinase
PLM3-1_50_b1_sep16_scaffold_552_21
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21511..22095)
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGN3_NITGG
Holliday junction resolvase
Holliday junction resolvase {ECO:0000313|EMBL:AIF84677.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_552_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22237..22875
DNA (639bp) protein (213aa)
Translin family protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B2E8_9ARCH
putative RNA-binding protein of the translin family
Putative RNA-binding protein of the translin family {ECO:0000313|EMBL:AIF84676.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_552_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(22885..24348)
DNA (1464bp) protein (488aa)
Putative digeranylgeranylglycerophospholipid reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGM9_NITGG
digeranylgeranylglycerophospholipid reductase
Putative digeranylgeranylglycerophospholipid reductase {ECO:0000313|EMBL:AFU57988.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_552_trna_2
unknown

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comp(24413..24518)
DNA (106bp)
transferRNA Leu
PLM3-1_50_b1_sep16_scaffold_552_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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24641..24940
DNA (300bp) protein (100aa)
Putative nucleic acid binding OB-fold tRNA/helicase-type Tax=Candidatus Nitrososphaera gargensis RepID=K0IH57_NITGG
nucleic acid binding OB-fold tRNA/helicase-type
Putative nucleic acid binding OB-fold tRNA/helicase-type {ECO:0000313|EMBL:AFU59210.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_552_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(24995..25795)
DNA (801bp) protein (267aa)
Putative 3-isopropylmalate dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INE0_NITGG
3-isopropylmalate dehydratase
Putative 3-isopropylmalate dehydratase {ECO:0000313|EMBL:AFU59209.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_552_26
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(25897..26550)
DNA (654bp) protein (218aa)
CHRD domain containing protein Tax=Geobacter sp. (strain M18) RepID=E8WL28_GEOS8
CHRD domain-containing protein
CHRD domain containing protein {ECO:0000313|EMBL:ADW11608.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM3-1_50_b1_sep16_scaffold_552_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(26763..27812)
DNA (1050bp) protein (350aa)
Diphthine synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF33_NITGG
putative diphthine synthase
Putative diphthine synthase {ECO:0000313|EMBL:AIC14450.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Displaying items 1-30 of 41 in total

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