ggKbase home page

PLM1_30_b1_sep16_scaffold_360

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_360_1
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..431)
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0H1R9_ACTM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL86956.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM1_30_b1_sep16_scaffold_360_2
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(541..2607)
DNA (2067bp) protein (689aa)
adenylyl cyclase class-3/4/guanylyl cyclase bin=bin8_Chloro species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
adenylyl cyclase class-3/4/guanylyl cyclase
Tax=CSP1_4_Chloroflexi
PLM1_30_b1_sep16_scaffold_360_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

2769..3020
DNA (252bp) protein (84aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_30_b1_sep16_scaffold_360_4
unknown

Not on your lists

comp(3963..4190)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_360_5
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4339..4536)
DNA (198bp) protein (66aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L7X6_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW10781.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_30_b1_sep16_scaffold_360_6
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(4624..5202)
DNA (579bp) protein (193aa)
Transcriptional regulator Tax=Leptolyngbya sp. PCC 7375 RepID=K9EU47_9CYAN
TetR family transcriptional regulator {ECO:0000313|EMBL:KIF43561.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
TetR family transcriptional regulator
PLM1_30_b1_sep16_scaffold_360_7
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5342..6178
DNA (837bp) protein (279aa)
Putative transcriptional regulator, XRE family Tax=Micromonospora lupini str. Lupac 08 RepID=I0LEC9_9ACTO
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EWM66734.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
helix-turn-helix domain-containing protein
PLM1_30_b1_sep16_scaffold_360_8
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6138..6383)
DNA (246bp) protein (82aa)
hypothetical protein Tax=Streptomyces sp. CNB091 RepID=UPI0003708D09
Regulator {ECO:0000313|EMBL:KJK11908.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_360_9
unknown

Not on your lists

6578..6784
DNA (207bp) protein (69aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_360_10
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6797..6991)
DNA (195bp) protein (65aa)
hypothetical protein Tax=Streptomyces sp. CNT372 RepID=UPI000365E700
Uncharacterized small protein {ECO:0000313|EMBL:EIE98863.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora glauca K62.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_360_11
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6995..9058)
DNA (2064bp) protein (688aa)
Carbon starvation protein CstA Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AQW4_STRRD
carbon starvation protein CstA
Carbon starvation protein CstA {ECO:0000313|EMBL:ACZ86511.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_30_b1_sep16_scaffold_360_12
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9328..9537
DNA (210bp) protein (70aa)
Cold-shock DNA-binding protein family Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BJG1_SANKS
cold-shock DNA-binding protein family
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ACZ20217.1}; species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
PLM1_30_b1_sep16_scaffold_360_13
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9590..10516)
DNA (927bp) protein (309aa)
UPI0003CFD742 related cluster Tax=unknown RepID=UPI0003CFD742
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH98160.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_30_b1_sep16_scaffold_360_14
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10742..14467)
DNA (3726bp) protein (1242aa)
ATP-dependent helicase HrpA Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A5S4_THECD
ATP-dependent helicase HrpA {ECO:0000313|EMBL:ACY98219.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
ATP-dependent helicase HrpA
PLM1_30_b1_sep16_scaffold_360_15
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14523..14900
DNA (378bp) protein (126aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PXH6_KRIFD
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADB29824.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_30_b1_sep16_scaffold_360_16
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14897..15097)
DNA (201bp) protein (67aa)
regulator Tax=Frankia sp. BMG5.12 RepID=UPI000366FCF2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJK59595.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
PLM1_30_b1_sep16_scaffold_360_17
unknown

Not on your lists

comp(15215..15493)
DNA (279bp) protein (93aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_360_18
unknown

Not on your lists

comp(15493..15654)
DNA (162bp) protein (54aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_360_19
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16021..16881
DNA (861bp) protein (287aa)
Helix-turn-helix domain protein Tax=Saccharomonospora paurometabolica YIM 90007 RepID=G4J0A0_9PSEU
Helix-turn-helix protein {ECO:0000313|EMBL:EHR50455.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
XRE family transcriptional regulator
PLM1_30_b1_sep16_scaffold_360_20
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16884..17087
DNA (204bp) protein (68aa)
regulator Tax=Frankia sp. BMG5.12 RepID=UPI000366FCF2
regulator
Putative regulator {ECO:0000313|EMBL:CAJ64974.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM1_30_b1_sep16_scaffold_360_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17182..18984)
DNA (1803bp) protein (601aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003675537
DNA-binding transcriptional activator of the SARP family {ECO:0000313|EMBL:EJL82923.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
SARP family transcriptional regulator
PLM1_30_b1_sep16_scaffold_360_22
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19059..19883)
DNA (825bp) protein (275aa)
Putative methyltransferase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VW73_9ACTO
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGZ39985.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_30_b1_sep16_scaffold_360_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(20002..20766)
DNA (765bp) protein (255aa)
Oxidoreductase family, NAD-binding Rossmann fold protein Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BE60_ZUNPS
Oxidoreductase, NAD-binding Rossmann fold protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 23 items

View Taxonomy