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PLM1_30_b1_sep16_scaffold_1611

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_1611_1
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..978)
DNA (978bp) protein (326aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
transcription-repair coupling factor Tax=Cellulomonas sp. JC225 RepID=UPI0003772D1C
transcription-repair coupling factor
PLM1_30_b1_sep16_scaffold_1611_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(1082..1837)
DNA (756bp) protein (252aa)
Transcriptional regulator, ArsR family Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZX6_9CHLR
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EFH82116.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
transcriptional regulator protein
PLM1_30_b1_sep16_scaffold_1611_3
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(1921..2520)
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AR83_RUBXD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABG06095.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_30_b1_sep16_scaffold_1611_4
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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2613..3110
DNA (498bp) protein (166aa)
Cupin 2, conserved barrel Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AR82_RUBXD
cupin 2 barrel domain-containing protein
Cupin 2, conserved barrel {ECO:0000313|EMBL:ABG06096.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_30_b1_sep16_scaffold_1611_5
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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comp(3118..4074)
DNA (957bp) protein (319aa)
L-threonine ammonia-lyase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] bin=bin8_Chloro species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
L-threonine ammonia-lyase (EC:4.3.1.19)
Tax=CSP1_4_Chloroflexi
PLM1_30_b1_sep16_scaffold_1611_6
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4134..4721)
DNA (588bp) protein (196aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Peptidyl-tRNA hydrolase Tax=Frankia alni (strain ACN14a) RepID=PTH_FRAAA
PLM1_30_b1_sep16_scaffold_1611_7
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4758..5420)
DNA (663bp) protein (221aa)
50S ribosomal protein L25 Tax=Nocardiopsis potens RepID=UPI000375A8A9
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
PLM1_30_b1_sep16_scaffold_1611_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(5507..6559)
DNA (1053bp) protein (351aa)
DNA topoisomerase (EC:5.99.1.2)
DNA topoisomerase {ECO:0000313|EMBL:ADB51848.1}; EC=5.99.1.2 {ECO:0000313|EMBL:ADB51848.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA topoisomerase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZ83_CONWI
PLM1_30_b1_sep16_scaffold_1611_9
unknown

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comp(6729..7097)
DNA (369bp) protein (123aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_1611_10
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7116..8177)
DNA (1062bp) protein (354aa)
ATP dependent DNA ligase Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H5Y3_CELFA
ATP dependent DNA ligase
ATP dependent DNA ligase {ECO:0000313|EMBL:AEE46713.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM1_30_b1_sep16_scaffold_1611_11
unknown

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comp(8256..8324)
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 11 items

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