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PLM2_5_b1_sep16_scaffold_1317

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_1317_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..566)
DNA (564bp) protein (188aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ATPase Tax=Bradyrhizobium elkanii RepID=UPI00035E712E
histidine kinase
PLM2_5_b1_sep16_scaffold_1317_2
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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948..1082
DNA (135bp) protein (45aa)
50S ribosomal protein L34 Tax=Bradyrhizobiaceae RepID=RL34_BRASO
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
PLM2_5_b1_sep16_scaffold_1317_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1107..1460
DNA (354bp) protein (118aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
rnpA; ribonuclease P protein component (EC:3.1.26.5)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0003652EA3
PLM2_5_b1_sep16_scaffold_1317_4
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1588..3462
DNA (1875bp) protein (625aa)
Membrane protein insertase YidC Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B48_RHOPB
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
putative inner membrane protein translocase component YidC
PLM2_5_b1_sep16_scaffold_1317_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3609..4262
DNA (654bp) protein (218aa)
Probable GTP-binding protein EngB Tax=Rhodopseudomonas palustris (strain BisB18) RepID=ENGB_RHOPB
engB; ribosome biogenesis GTP-binding protein YsxC
Probable GTP-binding protein EngB {ECO:0000255|HAMAP-Rule:MF_00321}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM2_5_b1_sep16_scaffold_1317_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4259..4639
DNA (381bp) protein (127aa)
Uncharacterized protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HAX3_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48851.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1317_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4718..5614
DNA (897bp) protein (299aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Acetylglutamate kinase Tax=Rhodopseudomonas palustris (strain BisB18) RepID=ARGB_RHOPB
PLM2_5_b1_sep16_scaffold_1317_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5788..6825
DNA (1038bp) protein (346aa)
membrane protein Tax=Bradyrhizobium japonicum RepID=UPI00037E6A08
Uncharacterized protein {ECO:0000313|EMBL:AHY55127.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1317_9
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6822..7520
DNA (699bp) protein (233aa)
HAD family hydrolase Tax=Bradyrhizobium elkanii RepID=UPI000313D819
HAD family hydrolase {ECO:0000313|EMBL:KJC57301.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
pyrimidine 5'-nucleotidase
PLM2_5_b1_sep16_scaffold_1317_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7778..8623
DNA (846bp) protein (282aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IDA8_9BRAD
PLM2_5_b1_sep16_scaffold_1317_11
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8718..9923
DNA (1206bp) protein (402aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
succinyl-diaminopimelate desuccinylase Tax=Mesorhizobium sp. WSM4349 RepID=UPI000371A1BC
dapE; succinyl-diaminopimelate desuccinylase
PLM2_5_b1_sep16_scaffold_1317_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9920..10486
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Afipia felis ATCC 53690 RepID=K8NQP2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30729.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
putative nucleoside phosphorylase
PLM2_5_b1_sep16_scaffold_1317_13
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10573..10860)
DNA (288bp) protein (96aa)
GIY-YIG nuclease Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B3803B
Excinuclease ABC, C subunit {ECO:0000313|EMBL:CCE10162.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
excinuclease ABC subunit C
PLM2_5_b1_sep16_scaffold_1317_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10924..11661)
DNA (738bp) protein (246aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000255|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000255|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000255|HAMAP-Rule:MF_00171}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
tRNA pseudouridine synthase A Tax=Rhodopseudomonas palustris (strain BisB18) RepID=TRUA_RHOPB
PLM2_5_b1_sep16_scaffold_1317_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11661..12593)
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HA48_9BRAD
PLM2_5_b1_sep16_scaffold_1317_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12743..13270)
DNA (528bp) protein (176aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
Peptide deformylase Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=DEF_BRADU
def; peptide deformylase
PLM2_5_b1_sep16_scaffold_1317_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13444..14652
DNA (1209bp) protein (403aa)
DNA recombinase Tax=Bradyrhizobium elkanii RepID=UPI0002F8F580
DNA recombinase {ECO:0000313|EMBL:KJC57308.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_1317_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14749..15048)
DNA (300bp) protein (100aa)
Putative endonuclease containing a URI domain Tax=Bradyrhizobium oligotrophicum S58 RepID=M5A1S5_9BRAD
putative endonuclease containing a URI domain
GIY-YIG nuclease {ECO:0000313|EMBL:KJC57309.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
PLM2_5_b1_sep16_scaffold_1317_19
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15135..16049
DNA (915bp) protein (305aa)
Blr8112 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BN6_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KGJ64322.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
Displaying 19 items

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