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PLM2_5_b1_sep16_scaffold_13

Search features with annotation key words

Displaying items 121-150 of 182 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_13_120
unknown

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136733..139717
DNA (2985bp) protein (995aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_13_121
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(139721..141886)
DNA (2166bp) protein (722aa)
hypothetical protein Tax=Ponticaulis koreensis RepID=UPI0003B4D67D
peptidase C14 caspase catalytic subunit p20
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM2_5_b1_sep16_scaffold_13_122
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(141899..143248)
DNA (1350bp) protein (450aa)
Phosphomethylpyrimidine synthase Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QWV0_PIRSD
thiamine biosynthesis protein ThiC
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_13_123
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(143348..143902)
DNA (555bp) protein (185aa)
Peptide deformylase bin=GWC2_Ignavibacteria_56_12 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
formylmethionine deformylase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_124
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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143928..144539
DNA (612bp) protein (204aa)
4-diphosphocytidyl-2C-methyl-D-erythritolsynthas E bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
molybdenum hydroxylase accessory protein, YgfJ family
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM2_5_b1_sep16_scaffold_13_125
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

144620..146053
DNA (1434bp) protein (478aa)
Fe-S cluster assembly protein SufB Tax=Melioribacter roseus (strain P3M) RepID=I6ZX02_MELRP
Fe-S cluster assembly protein SufB
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_126
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

146053..146808
DNA (756bp) protein (252aa)
FeS assembly ATPase SufC bin=GWC2_Ignavibacteria_56_12 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
sufC; SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_13_127
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

146808..148106
DNA (1299bp) protein (433aa)
SufD, needed for fhuF Fe-S center production/stability bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sufD; sufD, needed for fhuF Fe-S center production/stability
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_13_128
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

148106..148564
DNA (459bp) protein (153aa)
hypothetical protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_13_129
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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148564..149799
DNA (1236bp) protein (412aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein Tax=unclassified candidate division EM 19 RepID=UPI00037CFF17
cysteine desulfurase, SufS subfamily
PLM2_5_b1_sep16_scaffold_13_130
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

149845..150789
DNA (945bp) protein (315aa)
hypothetical protein Tax=Dyella ginsengisoli RepID=UPI00034BDA7F
ABC transporter related protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_131
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

150782..152041
DNA (1260bp) protein (420aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC69_GEMAT
hypothetical membrane protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_132
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

152655..154523
DNA (1869bp) protein (623aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J5_GEMAT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_133
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

154633..155454
DNA (822bp) protein (274aa)
Chromosome partitioning protein ParA Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J3_GEMAT
Cobyrinic acid ac-diamide synthase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_134
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

155451..156353
DNA (903bp) protein (301aa)
Chromosome partitioning protein ParB Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J2_GEMAT
parB-like partition protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_13_135
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

156350..157159
DNA (810bp) protein (270aa)
Peptidase M23 Tax=Thermus aquaticus Y51MC23 RepID=B7A5U9_THEAQ
peptidase M23
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_13_136
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

157161..157583
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Cyclobacterium qasimii M12-11B RepID=S7VGZ4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_13_137
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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157765..158922
DNA (1158bp) protein (386aa)
Major facilitator superfamily MFS_1 Tax=Chloroflexus RepID=A9WGT9_CHLAA
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABY36255.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
PLM2_5_b1_sep16_scaffold_13_138
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

158990..160465
DNA (1476bp) protein (492aa)
Peptidase M20 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ0_KORVE
peptidase M20
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_13_139
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(160469..162874)
DNA (2406bp) protein (802aa)
Glutamyl peptidase Tax=uncultured Acidobacteria bacterium RepID=H5SEP6_9BACT
Glutamyl peptidase {ECO:0000313|EMBL:BAL54632.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
glutamyl peptidase
PLM2_5_b1_sep16_scaffold_13_140
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(162892..163254)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Janthinobacterium sp. HH01 RepID=L9PBD3_9BURK
Glyoxalase {ECO:0000313|EMBL:KGM55578.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
glyoxalase
PLM2_5_b1_sep16_scaffold_13_141
unknown

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comp(163266..163529)
DNA (264bp) protein (88aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_13_142
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(163522..164424)
DNA (903bp) protein (301aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
iron-sulfur cluster binding protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_13_143
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

164710..165888
DNA (1179bp) protein (393aa)
class V aminotransferase bin=bin9_gal15 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
class V aminotransferase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_13_144
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

165845..166591
DNA (747bp) protein (249aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABM6_GEMAT
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_13_145
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

166588..167721
DNA (1134bp) protein (378aa)
deoxyhypusine synthase-like protein; K00809 deoxyhypusine synthase [EC:2.5.1.46] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
deoxyhypusine synthase-like protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_13_146
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

167774..169210
DNA (1437bp) protein (479aa)
Major facilitator family transporter Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N611_ERYLH
major facilitator family transporter
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_13_147
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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169207..170217
DNA (1011bp) protein (337aa)
D-alanine--D-alanine ligase domain protein bin=GWA2_OP3_53_43 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
putative D-alanine-D-alanine ligase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM2_5_b1_sep16_scaffold_13_148
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

170204..171208
DNA (1005bp) protein (335aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_13_149
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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171228..171725
DNA (498bp) protein (166aa)
Uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
Displaying items 121-150 of 182 in total

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