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PLM2_5_b1_sep16_scaffold_12112

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_12112_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3..467)
DNA (465bp) protein (155aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Trigger factor Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJR3_9BACT
trigger factor
PLM2_5_b1_sep16_scaffold_12112_2
unknown

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comp(586..975)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_12112_trna_1
unknown

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comp(618..699)
DNA (82bp)
transferRNA Leu
PLM2_5_b1_sep16_scaffold_12112_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1080..2576
DNA (1497bp) protein (499aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
UDP-N-acetylmuramyl tripeptide synthetase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-N-acetylmuramyl tripeptide synthetase (EC:6.3.2.13)
PLM2_5_b1_sep16_scaffold_12112_4
unknown

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comp(2573..2845)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_12112_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2898..4454)
DNA (1557bp) protein (519aa)
Amino acid transporter Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHF3_CHLTF
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) {ECO:0000313|EMBL:CDM67062.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
amino acid transporter
PLM2_5_b1_sep16_scaffold_12112_6
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4539..5855
DNA (1317bp) protein (439aa)
pabB; para-aminobenzoate synthase component 1 (EC:2.6.1.85)
Para-aminobenzoate synthase component 1 {ECO:0000313|EMBL:AFV12249.1}; EC=2.6.1.85 {ECO:0000313|EMBL:AFV12249.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
Para-aminobenzoate synthase component 1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LW69_THEPS
PLM2_5_b1_sep16_scaffold_12112_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5915..6388
DNA (474bp) protein (158aa)
Biopolymer transporter ExbD Tax=Sorangium cellulosum So0157-2 RepID=S4XL72_SORCE
Biopolymer transport protein {ECO:0000313|EMBL:CDM64998.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
biopolymer transporter ExbD
PLM2_5_b1_sep16_scaffold_12112_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6467..7303
DNA (837bp) protein (279aa)
hypothetical protein Tax=Flavobacterium rivuli RepID=UPI0003651557
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CDM65973.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
dnaJ; Chaperone protein dnaJ
PLM2_5_b1_sep16_scaffold_12112_9
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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7319..7582
DNA (264bp) protein (88aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
rpsT; 30S ribosomal protein S20
PLM2_5_b1_sep16_scaffold_12112_10
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7607..8233
DNA (627bp) protein (209aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00035C6218
Membrane lipoprotein {ECO:0000313|EMBL:EIZ03261.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
conserved membrane protein of unknown function
Displaying 11 items

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