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PLM3-1_170_b1_sep16_scaffold_5850

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_5850_1
unknown

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comp(3..77)
DNA (75bp) protein (25aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_5850_2

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comp(123..899)
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A2X7_NITMS
PRC-barrel domain protein {ECO:0000313|EMBL:KFM17961.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-P11.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_5850_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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973..1383
DNA (411bp) protein (137aa)
thiol-disulfide isomerase; K03671 thioredoxin 1 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
thiol-disulfide isomerase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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1446..1985
DNA (540bp) protein (180aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(1993..2355)
DNA (363bp) protein (121aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_trna_2
unknown

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comp(2400..2471)
DNA (72bp)
transferRNA Ala
PLM3-1_170_b1_sep16_scaffold_5850_6

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2548..3948
DNA (1401bp) protein (467aa)
Amidohydrolase family protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EP33_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM60377.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
dihydropyrimidinase
PLM3-1_170_b1_sep16_scaffold_5850_7
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(3997..4668)
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6ATY5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06171.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
PLM3-1_170_b1_sep16_scaffold_5850_8
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(4775..5398)
DNA (624bp) protein (208aa)
rpiA; ribose 5-phosphate isomerase A (EC:5.3.1.6)
ribose 5-phosphate isomerase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_9
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(5399..6211)
DNA (813bp) protein (271aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EVC1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EPA06229.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
conserved exported protein of unknown function
PLM3-1_170_b1_sep16_scaffold_5850_10

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comp(6394..6624)
DNA (231bp) protein (77aa)
Small nuclear ribonucleoprotein (RUXX) {ECO:0000313|EMBL:AIF10811.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_47_A04.;"
like-Sm ribonucleoprotein core bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative snRNP Sm-like protein
PLM3-1_170_b1_sep16_scaffold_5850_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(6684..7409)
DNA (726bp) protein (242aa)
Creatininase (EC:3.5.2.10)
creatininase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_12

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comp(7406..8254)
DNA (849bp) protein (283aa)
Formyl transferase domain-containing protein (PurU) {ECO:0000313|EMBL:AIE91114.1}; EC=3.5.1.10 {ECO:0000313|EMBL:AIE91114.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_106_A06.;"
formyl transferase domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative formyltetrahydrofolate deformylase
PLM3-1_170_b1_sep16_scaffold_5850_trna_1
unknown

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comp(8334..8418)
DNA (85bp)
transferRNA Leu
PLM3-1_170_b1_sep16_scaffold_5850_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8468..9817
DNA (1350bp) protein (450aa)
phosphoglucosamine mutase (EC:5.4.2.10); K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
phosphoglucosamine mutase (EC:5.4.2.10)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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9879..10265
DNA (387bp) protein (129aa)
rpl7ae; 50S ribosomal protein L7Ae bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rpl7ae; 50S ribosomal protein L7Ae
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_15
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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10262..10474
DNA (213bp) protein (71aa)
30S ribosomal protein S28e Tax=Thaumarchaeota archaeon N4 RepID=V6ARB4_9ARCH
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
rps28e; 30S ribosomal protein S28e
PLM3-1_170_b1_sep16_scaffold_5850_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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10690..10995
DNA (306bp) protein (102aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ndk; Nucleoside diphosphate kinase (EC:2.7.4.6)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_5850_17

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10995..12755
DNA (1761bp) protein (587aa)
Probable translation initiation factor IF-2 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CYZ2_9ARCH
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_80_D11.;"
infB; translation initiation factor aIF-2
PLM3-1_170_b1_sep16_scaffold_5850_18
Legionella fallonii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12973..13200)
DNA (228bp) protein (76aa)
Uncharacterized protein Tax=Herbaspirillum sp. CF444 RepID=J2L6A5_9BURK
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CEG55563.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella fallonii LLAP-10.;"
PLM3-1_170_b1_sep16_scaffold_5850_19
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(13187..13504)
DNA (318bp) protein (106aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Thaumarchaeota archaeon N4 RepID=V6AT83_9ARCH
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CDI05628.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 19
PLM3-1_170_b1_sep16_scaffold_5850_20

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comp(13573..14742)
DNA (1170bp) protein (390aa)
Glycosyl transferase family protein (DPM1) {ECO:0000313|EMBL:AIE92377.1}; EC=2.4.1.83 {ECO:0000313|EMBL:AIE92377.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_21_H05.;"
Putative glycosyl transferase Tax=environmental samples RepID=B3TBF5_9ARCH
glycosyl transferase
PLM3-1_170_b1_sep16_scaffold_5850_21

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comp(14792..15004)
DNA (213bp) protein (71aa)
Thioredoxin Tax=Thaumarchaeota archaeon N4 RepID=V6ARS9_9ARCH
Thioredoxin (TrxA) {ECO:0000313|EMBL:AIF07481.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_203_A01.;"
trxA; thioredoxin
PLM3-1_170_b1_sep16_scaffold_5850_22
unknown

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comp(15064..15192)
DNA (129bp) protein (43aa)

This feature has no annotations

Displaying 24 items

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