ggKbase home page

PLM3-1_50_b1_sep16_scaffold_91

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_91_1
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

3..614
DNA (612bp) protein (204aa)
ATPase Tax=Patulibacter medicamentivorans RepID=H0E4Q6_9ACTN
ATPase {ECO:0000313|EMBL:EHN11334.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_91_2
unknown

Not on your lists

616..930
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_91_3
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

927..1871
DNA (945bp) protein (315aa)
Ppx/GppA phosphatase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEC3_CONWI
Ppx/GppA phosphatase
Ppx/GppA phosphatase {ECO:0000313|EMBL:ADB53615.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_91_4
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1875..2297)
DNA (423bp) protein (141aa)
hypothetical protein Tax=Nocardiopsis RepID=UPI0003448AF2
Cbs domain-containing protein {ECO:0000313|EMBL:EIZ02753.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
putative signal transduction protein with CBS domains
PLM3-1_50_b1_sep16_scaffold_91_5
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(2470..3756)
DNA (1287bp) protein (429aa)
glutamate dehydrogenase Tax=Rhizobium sp. (strain BR816) RepID=UPI0003687344
response regulator receiver protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3-1_50_b1_sep16_scaffold_91_trna_1
unknown

Not on your lists

comp(3889..3976)
DNA (88bp)
transferRNA Leu
PLM3-1_50_b1_sep16_scaffold_91_6
unknown

Not on your lists

4069..4737
DNA (669bp) protein (223aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_91_7
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(4763..5446)
DNA (684bp) protein (228aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21377.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
hypothetical protein bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
PLM3-1_50_b1_sep16_scaffold_91_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

5534..6745
DNA (1212bp) protein (404aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7P5_ANADF
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_91_9
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

6836..7798
DNA (963bp) protein (321aa)
Thioredoxin reductase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBG9_THET1
thioredoxin reductase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_91_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

7932..8909
DNA (978bp) protein (326aa)
hypothetical protein Tax=Nocardioides sp. Iso805N RepID=UPI00036BCD31
magnesium and cobalt transport protein CorA
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_91_11
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(8913..9593)
DNA (681bp) protein (227aa)
Endonuclease III Tax=uncultured Chlorobi bacterium RepID=H5SGM3_9BACT
nth: endonuclease III
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_91_12
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(9583..10296)
DNA (714bp) protein (238aa)
Metallophosphoesterase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C752_SPHTD
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACZ39698.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_50_b1_sep16_scaffold_91_13
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(10298..13666)
DNA (3369bp) protein (1123aa)
UvrD/REP helicase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F256_CONWI
UvrD/REP helicase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_91_14
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13663..16581)
DNA (2919bp) protein (973aa)
ATP-dependent nuclease subunit B-like protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F255_CONWI
ATP-dependent nuclease subunit B-like protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_91_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16693..16962)
DNA (270bp) protein (90aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_91_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

17007..18074
DNA (1068bp) protein (356aa)
isocitrate dehydrogenase Tax=Alicyclobacillus pohliae RepID=UPI0003826913
isocitrate/isopropylmalate dehydrogenase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_91_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

18187..19275
DNA (1089bp) protein (363aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2)
NAD(P)(+) transhydrogenase (AB-specific) {ECO:0000313|EMBL:ACZ39377.1}; EC=1.6.1.2 {ECO:0000313|EMBL:ACZ39377.1};; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
NAD(P)(+) transhydrogenase (AB-specific) Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C560_SPHTD
PLM3-1_50_b1_sep16_scaffold_91_18
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

19272..19583
DNA (312bp) protein (104aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
NAD transhydrogenase alpha subunit
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_91_19
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19580..20965
DNA (1386bp) protein (462aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
NAD(P) transhydrogenase subunit beta Tax=Saccharomonospora marina XMU15 RepID=H5X0G4_9PSEU
NAD(P) transhydrogenase subunit beta
PLM3-1_50_b1_sep16_scaffold_91_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

20973..21911
DNA (939bp) protein (313aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:EHN10589.1}; EC=4.3.1.12 {ECO:0000313|EMBL:EHN10589.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
alanine dehydrogenase, Archaeoglobus fulgidus type (EC:4.3.1.12 1.4.1.1)
alanine dehydrogenase Tax=Patulibacter americanus RepID=UPI0003B6C51C
PLM3-1_50_b1_sep16_scaffold_91_21
unknown

Not on your lists

22153..22506
DNA (354bp) protein (118aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_91_22
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(22735..23868)
DNA (1134bp) protein (378aa)
FAD dependent oxidoreductase Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BGM8_MEISD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADH63844.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
PLM3-1_50_b1_sep16_scaffold_91_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(23880..24623)
DNA (744bp) protein (248aa)
Predicted Rossmann fold nucleotide-binding protein Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D2W3_PELTS
Smf; Rossmann fold nucleotide-binding protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_91_24
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24737..26152)
DNA (1416bp) protein (472aa)
Mg chelatase-related protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW71_RUBXD
Mg chelatase-like protein
Mg chelatase-related protein {ECO:0000313|EMBL:ABG04357.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3-1_50_b1_sep16_scaffold_91_25
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(26273..26884)
DNA (612bp) protein (204aa)
Conserved repeat domain protein Tax=Frankia sp. CN3 RepID=G6H6D5_9ACTO
collagen
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_91_26
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(26960..28081)
DNA (1122bp) protein (374aa)
Uncharacterized protein Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D365_PELTS
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_91_27
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28114..28434)
DNA (321bp) protein (107aa)
UPF0102 protein L687_02685 Tax=Microbacterium maritypicum MF109 RepID=T5KFX4_9MICO
UPF0102 protein L687_02685 {ECO:0000256|HAMAP-Rule:MF_00048}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_91_28
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(28431..29006)
DNA (576bp) protein (192aa)
ribonuclease H (EC:3.1.26.4)
Ribonuclease HII Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1D0_CONWI
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_91_29
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(29084..29434)
DNA (351bp) protein (117aa)
50S ribosomal protein L19 Tax=Vagococcus lutrae LBD1 RepID=V6Q7P7_9ENTE
50S ribosomal protein L19
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying items 1-30 of 54 in total

View Taxonomy