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PLM3_127_b2_sep16_scaffold_947

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_947_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2..448)
-----------------
DNA (447bp)
protein (149aa)
Putative General secretion pathway protein I, GspI (Modular protein) bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein H
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(445..837)
-----------------
DNA (393bp)
protein (131aa)
General secretion pathway protein H bin=GWC2_Methylomirabilis_70_16 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(870..1319)
-----------------
DNA (450bp)
protein (150aa)
Pseudopilin, cryptic, general secretion pathway bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein G
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(1316..2527)
-----------------
DNA (1212bp)
protein (404aa)
gspF; general secretory pathway component, cryptic bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gspF; general secretory pathway component, cryptic
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_947_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2532..4226)
-----------------
DNA (1695bp)
protein (565aa)
General secretion pathway protein E (Type II traffic warden ATPase) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
General secretion pathway protein E (Type II traffic warden ATPase)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4425..4826
-----------------
DNA (402bp)
protein (134aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4889..5947
-----------------
DNA (1059bp)
protein (353aa)
RNA polymerase sigma-E factor bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma factor RpoE
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_947_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6005..7534
-----------------
DNA (1530bp)
protein (510aa)
Putative propionyl-CoA carboxylase beta subunit bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
propionyl-CoA carboxylase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(7688..9430)
-----------------
DNA (1743bp)
protein (581aa)
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_947_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9463..10320
-----------------
DNA (858bp)
protein (286aa)
Cobalamin synthase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin 5'-phosphate synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10299..10949
-----------------
DNA (651bp)
protein (217aa)
Metal dependent phosphohydrolase bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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10946..12502
-----------------
DNA (1557bp)
protein (519aa)
ABC transporter substrate binding protein (Dipeptide) bin=GWF2_Methylomirabilis_70_14 species=Agrobacterium vitis genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein family 5
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_947_13
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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12514..13458
-----------------
DNA (945bp)
protein (315aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component bin=GWF2_Methylomirabilis_70_14 species=Brevibacillus sp. BC25 genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM3_127_b2_sep16_scaffold_947_14
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13455..14366
-----------------
DNA (912bp)
protein (304aa)
Binding-protein-dependent transport systems inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppC2; Dipeptide ABC transporter; permease component
Peptide ABC transporter permease {ECO:0000313|EMBL:KJR64626.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
PLM3_127_b2_sep16_scaffold_947_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14344..14856)
-----------------
DNA (513bp)
protein (171aa)
id=14625963 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_947_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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14952..16532
-----------------
DNA (1581bp)
protein (527aa)
Gamma-glutamyltransferase bin=GWC2_Methylomirabilis_70_16 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gamma-glutamyltransferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_947_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(16780..17460)
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_947_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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17502..17855
-----------------
DNA (354bp)
protein (118aa)
RNA-binding S4 bin=GWC2_Methylomirabilis_70_16 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tRNA synthetase RNA-binding protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_947_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17863..18639
-----------------
DNA (777bp)
protein (259aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_20
Pseudanabaena biceps, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(18762..19238)
-----------------
DNA (477bp)
protein (159aa)
neuA; CMP-N-acetlyneuraminic acid synthetase (EC:2.7.7.43)
Cupin 2 conserved barrel domain protein Tax=Pseudanabaena biceps PCC 7429 RepID=L8N2T9_9CYAN
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ELS34011.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena biceps PCC 7429.;"
PLM3_127_b2_sep16_scaffold_947_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19296..20390)
-----------------
DNA (1095bp)
protein (365aa)
Adenylate/guanylate cyclase bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylate/guanylate cyclase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_947_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(20387..20776)
-----------------
DNA (390bp)
protein (130aa)
Response regulator receiver protein bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_947_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20761..23622)
-----------------
DNA (2862bp)
protein (954aa)
Histidine kinase,HAMP domain-containing protein,histidine kinase,cache domain-containing protein,GAF domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two-component hybrid sensor and regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_947_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

24013..24963
-----------------
DNA (951bp)
protein (317aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_947_25
unknown

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comp(24974..25117)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_947_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(25114..25353)
-----------------
DNA (240bp)
protein (80aa)
id=3417331 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_947_27
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25462..26256)
-----------------
DNA (795bp)
protein (265aa)
Enoyl-CoA hydratase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADQ0_GEMAT
Enoyl-CoA hydratase {ECO:0000313|EMBL:KCZ87922.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
enoyl-CoA hydratase
PLM3_127_b2_sep16_scaffold_947_28

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comp(26429..26980)
-----------------
DNA (552bp)
protein (184aa)
hypothetical protein; K01259 proline iminopeptidase [EC:3.4.11.5] bin=bin9_gal15 species=Streptomyces prunicolor genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
Marine sediment metagenome DNA, contig: S01H1_S22300 {ECO:0000313|EMBL:GAG22151.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
proline-specific peptidase
PLM3_127_b2_sep16_scaffold_947_29
unknown

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27100..27531
-----------------
DNA (432bp)
protein (144aa)

This feature has no annotations

Displaying 29 items

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