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PLM3_127_b2_sep16_scaffold_14283

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_14283_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1276)
-----------------
DNA (1275bp)
protein (425aa)
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Polyribonucleotide nucleotidyltransferase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=PNP_THISH
PLM3_127_b2_sep16_scaffold_14283_2

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comp(1351..1620)
-----------------
DNA (270bp)
protein (90aa)
Ribosomal protein S15, bacterial-type Tax=mine drainage metagenome RepID=T0ZNX9_9ZZZZ
Ribosomal protein S15, bacterial-type {ECO:0000313|EMBL:EQD46187.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S15
PLM3_127_b2_sep16_scaffold_14283_3
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1675..2613)
-----------------
DNA (939bp)
protein (313aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
tRNA pseudouridine synthase B Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000370D132
tRNA pseudouridine synthase B
PLM3_127_b2_sep16_scaffold_14283_4
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2628..2981)
-----------------
DNA (354bp)
protein (118aa)
ribosome-binding factor A Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037FBC89
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
ribosome-binding factor A
PLM3_127_b2_sep16_scaffold_14283_5
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3038..4651)
-----------------
DNA (1614bp)
protein (538aa)
translation initiation factor IF-2 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003823593
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
infB; translation initiation factor IF-2
PLM3_127_b2_sep16_scaffold_14283_6
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4605..5438)
-----------------
DNA (834bp)
protein (278aa)
Translation initiation factor IF-2 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=IF2_THISH
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_14283_7
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5431..6948)
-----------------
DNA (1518bp)
protein (506aa)
peptidase M54 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037852E9
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_14283_8

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comp(6972..7421)
-----------------
DNA (450bp)
protein (150aa)
Protein belonging to Uncharacterized protein family UPF0090 (Fragment) Tax=mine drainage metagenome RepID=T1AQL1_9ZZZZ
Protein belonging to Uncharacterized protein family UPF0090 {ECO:0000313|EMBL:EQD44345.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_14283_9
unknown

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comp(7631..7981)
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

Displaying 9 items

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