ggKbase home page

PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 451-500 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_33394
Class: Alphaproteobacteria (83.33%)
6 5746 bp 66.15 10.78 88.44
PLM3_30_b1_sep16_scaffold_10447
Order: Rhizobiales (60%)
5 4603 bp 62.87 9.03 88.44
PLM3_30_b1_sep16_scaffold_6247
Genus: Bradyrhizobium (66.67%)
6 6021 bp 65.12 7.08 88.44
PLM3_30_b1_sep16_scaffold_23450
Species: Rhodopseudomonas palustris (66.67%)
3 2945 bp 68.32 8.20 88.42
PLM3_30_b1_sep16_scaffold_42611
Order: Rhizobiales (62.5%)
8 4628 bp 66.66 7.32 88.42
PLM3_30_b1_sep16_scaffold_15021
Genus: Bradyrhizobium (60%)
5 3773 bp 65.57 9.34 88.42
PLM3_30_b1_sep16_scaffold_673
Order: Rhizobiales (55.56%)
18 17413 bp 64.34 8.53 88.40
PLM3_30_b1_sep16_scaffold_2869
Order: Rhizobiales (50%)
12 8776 bp 64.53 14.97 88.33
PLM3_30_b1_sep16_scaffold_470
Phylum: Proteobacteria (73.08%)
26 24292 bp 64.73 8.35 88.33
PLM3_30_b1_sep16_scaffold_10101
Order: Rhizobiales (55.56%)
18 15780 bp 66.44 8.14 88.17
PLM3_30_b1_sep16_scaffold_9587
Species: Rhodovulum sp. PH10 (50%)
4 4828 bp 64.95 10.75 88.17
PLM3_30_b1_sep16_scaffold_3026
Phylum: Proteobacteria (50%)
10 8548 bp 65.85 8.14 88.13
PLM3_30_b1_sep16_scaffold_17747
Order: Rhizobiales (60%)
5 5390 bp 63.99 8.38 88.05
PLM3_30_b1_sep16_scaffold_12444
Genus: Bradyrhizobium (60%)
5 4189 bp 65.79 8.81 88.02
PLM3_30_b1_sep16_scaffold_8883
Class: Alphaproteobacteria (100%)
7 5035 bp 65.00 7.78 88.00
PLM3_30_b1_sep16_scaffold_32198
Order: Burkholderiales (80%)
5 5158 bp 66.40 7.94 88.00
PLM3_30_b1_sep16_scaffold_7737
Order: Rhizobiales (75%)
8 7447 bp 67.37 7.80 87.98
PLM3_30_b1_sep16_scaffold_9301
Order: Rhizobiales (72.73%)
11 6206 bp 63.70 7.42 87.98
PLM3_30_b1_sep16_scaffold_12975
Order: Rhizobiales (83.33%)
6 7711 bp 66.00 8.93 87.97
PLM3_30_b1_sep16_scaffold_16626
Class: Alphaproteobacteria (80%)
5 3895 bp 66.68 8.01 87.96
PLM3_30_b1_sep16_scaffold_17969 4 3411 bp 67.11 6.42 87.95
PLM3_30_b1_sep16_scaffold_9596
Order: Rhizobiales (62.5%)
8 7051 bp 64.26 7.51 87.95
PLM3_30_b1_sep16_scaffold_2473
Class: Alphaproteobacteria (66.67%)
9 9942 bp 65.78 9.84 87.90
PLM3_30_b1_sep16_scaffold_28355
Order: Rhizobiales (66.67%)
3 2652 bp 64.18 9.67 87.90
PLM3_30_b1_sep16_scaffold_86188
Order: Rhizobiales (60%)
5 3222 bp 64.65 7.40 87.90
PLM3_30_b1_sep16_scaffold_11235
Order: Rhizobiales (57.14%)
7 4427 bp 67.40 8.00 87.89
PLM3_30_b1_sep16_scaffold_16119
Order: Rhizobiales (75%)
8 6469 bp 65.65 8.83 87.88
PLM3_30_b1_sep16_scaffold_5740
Class: Alphaproteobacteria (71.43%)
7 6786 bp 64.56 7.56 87.84
PLM3_30_b1_sep16_scaffold_4882
Class: Alphaproteobacteria (62.5%)
24 19356 bp 65.46 7.42 87.79
PLM3_30_b1_sep16_scaffold_5020
Order: Rhizobiales (57.14%)
7 6714 bp 65.50 7.91 87.76
PLM3_30_b1_sep16_scaffold_12599
Order: Rhizobiales (50%)
4 4165 bp 64.59 7.64 87.73
PLM3_30_b1_sep16_scaffold_21861
Order: Rhizobiales (60%)
5 5193 bp 66.32 8.41 87.70
PLM3_30_b1_sep16_scaffold_14231
Species: Rhodovulum sp. PH10 (80%)
5 4209 bp 66.05 9.02 87.67
PLM3_30_b1_sep16_scaffold_7720
Order: Rhizobiales (54.55%)
11 9853 bp 66.44 9.12 87.66
PLM3_30_b1_sep16_scaffold_11639
Order: Rhizobiales (57.14%)
14 12904 bp 65.10 9.53 87.65
PLM3_30_b1_sep16_scaffold_13901
Genus: Bradyrhizobium (57.14%)
7 4501 bp 65.05 9.26 87.65
PLM3_30_b1_sep16_scaffold_4608
Phylum: Proteobacteria (77.78%)
9 8071 bp 66.82 8.27 87.65
PLM3_30_b1_sep16_scaffold_28427
Genus: Bradyrhizobium (75%)
4 2647 bp 64.22 8.16 87.61
PLM3_30_b1_sep16_scaffold_9272
Order: Rhizobiales (85.71%)
7 8128 bp 65.07 7.53 87.59
PLM3_30_b1_sep16_scaffold_20248
Order: Rhizobiales (75%)
4 3615 bp 66.39 8.96 87.55
PLM3_30_b1_sep16_scaffold_9343
Class: Alphaproteobacteria (60%)
5 4897 bp 65.18 8.85 87.54
PLM3_30_b1_sep16_scaffold_4865
Class: Alphaproteobacteria (83.33%)
12 11220 bp 67.70 8.02 87.54
PLM3_30_b1_sep16_scaffold_7676
Order: Rhizobiales (62.5%)
8 5416 bp 67.54 8.20 87.54
PLM3_30_b1_sep16_scaffold_12939
Order: Rhizobiales (80%)
5 4103 bp 67.15 7.24 87.52
PLM3_30_b1_sep16_scaffold_25608
Order: Rhizobiales (75%)
4 2801 bp 67.69 9.43 87.50
PLM3_30_b1_sep16_scaffold_20241
Phylum: Proteobacteria (66.67%)
3 3929 bp 65.31 7.71 87.50
PLM3_30_b1_sep16_scaffold_10231
Species: Bosea sp. LC85 (57.14%)
7 7117 bp 62.47 6.72 87.47
PLM3_30_b1_sep16_scaffold_3838
Order: Rhizobiales (60%)
10 7622 bp 64.71 7.81 87.46
PLM3_30_b1_sep16_scaffold_8414
Phylum: Proteobacteria (50%)
10 5170 bp 67.10 7.75 87.45
PLM3_30_b1_sep16_scaffold_5290
Order: Rhizobiales (60%)
10 6557 bp 65.04 7.89 87.34
Displaying items 451-500 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.