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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 201-250 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_18077
Domain: Bacteria (100%)
3 3399 bp 67.73 9.05 93.12
PLM3_30_b1_sep16_scaffold_28584
Order: Rhizobiales (66.67%)
3 2639 bp 66.88 7.22 93.10
PLM3_30_b1_sep16_scaffold_7417
Species: RLO_Betaproteobacteria_65_14 (60%)
5 5512 bp 66.42 8.41 93.07
PLM3_30_b1_sep16_scaffold_28621
Order: Rhodobacterales (60%)
5 3780 bp 66.93 7.42 93.02
PLM3_30_b1_sep16_scaffold_1837
Class: Alphaproteobacteria (60%)
15 15768 bp 64.97 9.01 92.98
PLM3_30_b1_sep16_scaffold_3854
Order: Rhizobiales (71.43%)
7 7607 bp 66.82 8.58 92.95
PLM3_30_b1_sep16_scaffold_13977
Species: RBG_16_Betaproteobacteria_66_20_curated (66.67%)
3 3931 bp 64.61 8.97 92.95
PLM3_30_b1_sep16_scaffold_3472
Class: Alphaproteobacteria (66.67%)
12 11671 bp 67.37 8.10 92.92
PLM3_30_b1_sep16_scaffold_7569
Class: Betaproteobacteria (50%)
6 5461 bp 66.47 7.33 92.90
PLM3_30_b1_sep16_scaffold_17818
Order: Rhizobiales (66.67%)
3 3430 bp 66.38 8.09 92.89
PLM3_30_b1_sep16_scaffold_2310
Class: Alphaproteobacteria (50%)
26 28249 bp 62.89 7.36 92.85
PLM3_30_b1_sep16_scaffold_5368
Class: Alphaproteobacteria (53.85%)
13 12461 bp 66.09 7.57 92.83
PLM3_30_b1_sep16_scaffold_5345
Order: Rhizobiales (80%)
10 9797 bp 66.00 7.98 92.81
PLM3_30_b1_sep16_scaffold_8868
Order: Rhizobiales (66.67%)
6 5040 bp 66.27 8.10 92.80
PLM3_30_b1_sep16_scaffold_14074
Order: Rhizobiales (57.14%)
7 3915 bp 66.82 7.51 92.80
PLM3_30_b1_sep16_scaffold_1397
Order: Rhizobiales (100%)
10 12112 bp 65.42 8.03 92.78
PLM3_30_b1_sep16_scaffold_8318
Phylum: Proteobacteria (66.67%)
6 5197 bp 67.90 9.90 92.77
PLM3_30_b1_sep16_scaffold_6294
Order: Rhizobiales (83.33%)
12 11830 bp 65.80 9.51 92.76
PLM3_30_b1_sep16_scaffold_4637
Order: Rhizobiales (61.54%)
13 12227 bp 67.43 9.32 92.75
PLM3_30_b1_sep16_scaffold_13191
Order: Rhizobiales (50%)
6 5396 bp 68.01 10.09 92.74
PLM3_30_b1_sep16_scaffold_19950
Genus: Bradyrhizobium (66.67%)
3 3221 bp 62.53 8.10 92.67
PLM3_30_b1_sep16_scaffold_27646
Genus: Bradyrhizobium (100%)
3 2687 bp 66.84 10.22 92.67
PLM3_30_b1_sep16_scaffold_7509
Genus: Afipia (50%)
8 5847 bp 67.21 8.29 92.66
PLM3_30_b1_sep16_scaffold_2017
Class: Alphaproteobacteria (80%)
10 10256 bp 65.96 7.28 92.61
PLM3_30_b1_sep16_scaffold_54816
Species: Bosea sp. LC85 (75%)
4 2725 bp 63.49 7.71 92.59
PLM3_30_b1_sep16_scaffold_5886
Phylum: Proteobacteria (66.67%)
12 9254 bp 65.86 8.66 92.55
PLM3_30_b1_sep16_scaffold_22186
Order: Rhizobiales (60%)
5 3034 bp 65.66 7.91 92.55
PLM3_30_b1_sep16_scaffold_24622
Genus: Bradyrhizobium (75%)
4 2866 bp 64.38 9.11 92.53
PLM3_30_b1_sep16_scaffold_799
Order: Rhizobiales (68.75%)
16 15363 bp 65.84 7.72 92.52
PLM3_30_b1_sep16_scaffold_54928
Order: Rhizobiales (80%)
5 2955 bp 65.52 11.68 92.49
PLM3_30_b1_sep16_scaffold_3916
Class: Alphaproteobacteria (63.64%)
11 9120 bp 67.05 7.19 92.47
PLM3_30_b1_sep16_scaffold_16642
Class: Alphaproteobacteria (55.56%)
9 7463 bp 66.84 7.18 92.46
PLM3_30_b1_sep16_scaffold_76213
Species: Acidisphaera rubrifaciens (50%)
2 2651 bp 63.45 6.90 92.46
PLM3_30_b1_sep16_scaffold_17385
Class: Alphaproteobacteria (50%)
6 3476 bp 64.07 8.46 92.43
PLM3_30_b1_sep16_scaffold_25012
Genus: Bradyrhizobium (66.67%)
6 3296 bp 67.17 6.92 92.38
PLM3_30_b1_sep16_scaffold_16541
Order: Rhizobiales (60%)
5 3576 bp 64.77 6.84 92.37
PLM3_30_b1_sep16_scaffold_8973
Phylum: Proteobacteria (50%)
6 5000 bp 66.14 7.47 92.34
PLM3_30_b1_sep16_scaffold_19990
Order: Rhizobiales (80%)
5 4300 bp 66.53 7.53 92.30
PLM3_30_b1_sep16_scaffold_4186
Order: Rhizobiales (62.5%)
8 7320 bp 67.13 8.67 92.30
PLM3_30_b1_sep16_scaffold_64078
Order: Rhizobiales (50%)
4 3735 bp 68.22 7.95 92.29
PLM3_30_b1_sep16_scaffold_7261
Order: Rhizobiales (57.14%)
7 5572 bp 66.24 8.29 92.28
PLM3_30_b1_sep16_scaffold_25257
Phylum: Proteobacteria (55.56%)
9 7295 bp 63.65 7.14 92.28
PLM3_30_b1_sep16_scaffold_2413
Class: Alphaproteobacteria (100%)
9 9501 bp 65.42 8.90 92.26
PLM3_30_b1_sep16_scaffold_12432
Order: Rhizobiales (50%)
8 7994 bp 64.89 8.74 92.24
PLM3_30_b1_sep16_scaffold_17140
Genus: Bradyrhizobium (50%)
4 3506 bp 65.17 8.04 92.24
PLM3_30_b1_sep16_scaffold_917
Order: Rhizobiales (66.67%)
15 16346 bp 66.80 8.79 92.19
PLM3_30_b1_sep16_scaffold_7648
Class: Betaproteobacteria (85.71%)
7 5427 bp 65.54 8.73 92.15
PLM3_30_b1_sep16_scaffold_9938
Order: Rhizobiales (87.5%)
8 4734 bp 65.91 6.81 92.14
PLM3_30_b1_sep16_scaffold_13555
Order: Rhizobiales (50%)
4 3995 bp 65.81 9.35 92.14
PLM3_30_b1_sep16_scaffold_26907
Phylum: Bacteroidetes (50%)
4 3940 bp 67.08 6.32 92.13
Displaying items 201-250 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.