ggKbase home page
Advanced Search
Search Help

PLM3_30_b1_sep16_Bacteroidetes_Sphingobacteriia_43_6

PLM3_30cm_b1_sep2016_Sphingobacteriales_43_6
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: PLM3_30cm_b1_sep2016_UNK Curated version: PLM3_30_b1_sep16_metabat_bin_62_curated

Properties

Avg. coverage: 6.20 Longest contig: 65.53 Kbp Bin length: 4.57 Mbp GC content: 43.09 %
Contigs count: 405 Features count: 4397 rRNAs count: 0 tRNAs count: 36

Genome completeness

near complete RP 48 / 55 MC: 4 BSCG 49 / 51 MC: 5 ASCG 12 / 38 MC: 1
Displaying items 251-300 of 405 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_674
Species: Niastella koreensis (51.72%)
29 30059 bp 43.12 6.81 89.20
PLM3_30_b1_sep16_scaffold_15001
Order: Sphingobacteriales (50%)
8 8081 bp 43.16 6.83 89.21
PLM3_30_b1_sep16_scaffold_30787
Phylum: Bacteroidetes (100%)
3 2532 bp 43.88 6.28 89.22
PLM3_30_b1_sep16_scaffold_17103
Order: Sphingobacteriales (50%)
8 8095 bp 43.19 5.95 89.28
PLM3_30_b1_sep16_scaffold_1204
Order: Sphingobacteriales (76%)
50 49079 bp 43.46 6.07 89.36
PLM3_30_b1_sep16_scaffold_28289
Species: Niastella koreensis (75%)
4 3726 bp 44.23 5.48 89.37
PLM3_30_b1_sep16_scaffold_8560
Species: Niastella koreensis (50%)
6 8142 bp 43.27 6.19 89.46
PLM3_30_b1_sep16_scaffold_7079
Phylum: Bacteroidetes (88.89%)
9 12206 bp 41.27 6.65 89.56
PLM3_30_b1_sep16_scaffold_27003
Order: Sphingobacteriales (71.43%)
7 4223 bp 43.24 5.75 89.58
PLM3_30_b1_sep16_scaffold_15794
Species: Niastella koreensis (66.67%)
6 3667 bp 42.60 5.44 89.58
PLM3_30_b1_sep16_scaffold_18933
Species: Niastella koreensis (66.67%)
3 3315 bp 42.84 6.47 89.59
PLM3_30_b1_sep16_scaffold_869
Species: Niastella koreensis (55%)
20 26276 bp 43.29 6.27 89.63
PLM3_30_b1_sep16_scaffold_3338
Order: Sphingobacteriales (88.89%)
9 13494 bp 43.35 6.10 89.71
PLM3_30_b1_sep16_scaffold_4283
Species: Niastella koreensis (54.55%)
11 17970 bp 42.53 6.39 89.72
PLM3_30_b1_sep16_scaffold_14353
Species: Niastella koreensis (80%)
5 3872 bp 42.43 5.66 89.72
PLM3_30_b1_sep16_scaffold_3164
Species: Niastella koreensis (50%)
8 10990 bp 42.01 6.67 89.73
PLM3_30_b1_sep16_scaffold_2579
Order: Sphingobacteriales (55.56%)
9 9808 bp 42.96 6.15 89.74
PLM3_30_b1_sep16_scaffold_7379
Order: Sphingobacteriales (88.89%)
9 9158 bp 43.49 5.52 89.76
PLM3_30_b1_sep16_scaffold_5083
Order: Sphingobacteriales (71.43%)
7 6683 bp 42.80 6.85 89.78
PLM3_30_b1_sep16_scaffold_2099
Order: Sphingobacteriales (61.9%)
21 19923 bp 43.05 6.24 89.81
PLM3_30_b1_sep16_scaffold_5870
Species: Niastella koreensis (62.5%)
8 9939 bp 43.08 5.78 89.89
PLM3_30_b1_sep16_scaffold_3762
Species: Niastella koreensis (54.55%)
11 8648 bp 42.99 5.39 89.95
PLM3_30_b1_sep16_scaffold_10026
Species: Pedobacter glucosidilyticus (50%)
6 8902 bp 43.62 5.81 90.01
PLM3_30_b1_sep16_scaffold_938
Species: Niastella koreensis (72.73%)
11 14285 bp 43.17 6.05 90.03
PLM3_30_b1_sep16_scaffold_11998
Order: Sphingobacteriales (71.43%)
7 6332 bp 44.47 5.40 90.16
PLM3_30_b1_sep16_scaffold_10220
Species: Niastella koreensis (50%)
2 4669 bp 45.58 6.78 90.28
PLM3_30_b1_sep16_scaffold_2863
Order: Sphingobacteriales (62.5%)
8 8789 bp 44.27 6.14 90.28
PLM3_30_b1_sep16_scaffold_1527
Phylum: Bacteroidetes (80%)
45 65532 bp 43.10 6.56 90.29
PLM3_30_b1_sep16_scaffold_2648
Order: Sphingobacteriales (60%)
10 9136 bp 42.23 6.12 90.30
PLM3_30_b1_sep16_scaffold_9880
Phylum: Bacteroidetes (50%)
6 6443 bp 43.54 6.36 90.36
PLM3_30_b1_sep16_scaffold_15291
Order: Sphingobacteriales (75%)
4 3737 bp 41.48 7.27 90.39
PLM3_30_b1_sep16_scaffold_7316
Order: Sphingobacteriales (50%)
8 10408 bp 43.00 6.50 90.42
PLM3_30_b1_sep16_scaffold_37028
Genus: Flavihumibacter (60%)
5 3828 bp 43.31 5.88 90.44
PLM3_30_b1_sep16_scaffold_609
Phylum: Bacteroidetes (76.92%)
13 17040 bp 43.57 6.56 90.46
PLM3_30_b1_sep16_scaffold_989
Phylum: Bacteroidetes (91.67%)
24 35129 bp 42.17 6.02 90.46
PLM3_30_b1_sep16_scaffold_17570
Species: Flavihumibacter solisilvae (62.5%)
8 6718 bp 44.67 5.47 90.47
PLM3_30_b1_sep16_scaffold_16802
Species: Flavihumibacter solisilvae (66.67%)
3 3545 bp 44.46 4.95 90.55
PLM3_30_b1_sep16_scaffold_1445
Species: Niastella koreensis (50%)
10 13692 bp 43.19 6.58 90.56
PLM3_30_b1_sep16_scaffold_7585
Order: Sphingobacteriales (54.55%)
11 14999 bp 43.13 6.07 90.65
PLM3_30_b1_sep16_scaffold_4714
Order: Sphingobacteriales (73.33%)
15 14410 bp 44.07 6.14 90.75
PLM3_30_b1_sep16_scaffold_10813
Species: Niastella koreensis (80%)
5 4524 bp 43.88 6.10 90.78
PLM3_30_b1_sep16_scaffold_33256
Phylum: Bacteroidetes (80%)
5 4026 bp 43.79 5.07 90.83
PLM3_30_b1_sep16_scaffold_3390
Order: Sphingobacteriales (81.82%)
11 12199 bp 44.16 5.90 90.87
PLM3_30_b1_sep16_scaffold_12777
Order: Sphingobacteriales (60%)
5 4132 bp 40.10 6.21 90.90
PLM3_30_b1_sep16_scaffold_9260
Species: Niastella koreensis (75%)
4 5771 bp 43.04 5.90 90.92
PLM3_30_b1_sep16_scaffold_4108
Phylum: Bacteroidetes (75%)
8 7376 bp 42.76 6.45 90.98
PLM3_30_b1_sep16_scaffold_2607
Order: Sphingobacteriales (53.85%)
13 15751 bp 42.92 6.12 91.04
PLM3_30_b1_sep16_scaffold_1051
Order: Sphingobacteriales (50%)
8 15753 bp 42.51 6.82 91.05
PLM3_30_b1_sep16_scaffold_6182
Phylum: Bacteroidetes (80%)
20 16049 bp 43.79 5.98 91.07
PLM3_30_b1_sep16_scaffold_20173
Order: Cytophagales (50%)
6 5395 bp 45.52 5.67 91.08
Displaying items 251-300 of 405 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.