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PLM3_60_coex_sep16_scaffold_3

Search features with annotation key words

Displaying items 121-150 of 157 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3_117
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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117446..118546
DNA (1101bp) protein (367aa)
sn-glycerol-3-phosphate import ATP-binding protein ugpC Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F0Y1_9RHIZ
putative sugar ABC transporter, ATP-binding protein
Putative sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AHK42803.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
PLM3_60_coex_sep16_scaffold_3_118
unknown

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118928..119197
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_119

Not on your lists

119602..120663
DNA (1062bp) protein (354aa)
methyltransferase (EC:2.1.1.-); K00599 [EC:2.1.1.-] bin=RBG_19FT_COMBO_GAL15_69_19 species=Bradyrhizobium diazoefficiens genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
N-methyltransferase MarM {ECO:0000313|EMBL:AHE14572.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
O-methyltransferase family 2
PLM3_60_coex_sep16_scaffold_3_120
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(120701..121207)
DNA (507bp) protein (169aa)
UPI0003D00B5F related cluster Tax=unknown RepID=UPI0003D00B5F
Uncharacterized protein {ECO:0000313|EMBL:ESY94391.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
PLM3_60_coex_sep16_scaffold_3_121
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(121204..121791)
DNA (588bp) protein (196aa)
UPI0003D05FFA related cluster Tax=unknown RepID=UPI0003D05FFA
Uncharacterized protein {ECO:0000313|EMBL:ESY94390.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
putative p040
PLM3_60_coex_sep16_scaffold_3_122
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(121784..122389)
DNA (606bp) protein (202aa)
UPI0003D06652 related cluster Tax=unknown RepID=UPI0003D06652
Uncharacterized protein {ECO:0000313|EMBL:ESY94389.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3_123
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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122770..124302
DNA (1533bp) protein (511aa)
Trimethylamine methyltransferase Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TIB1_MESCW
Trimethylamine methyltransferase {ECO:0000313|EMBL:CDX12545.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
trimethylamine methyltransferase
PLM3_60_coex_sep16_scaffold_3_124
unknown

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124811..125398
DNA (588bp) protein (196aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_125
unknown

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comp(125433..125981)
DNA (549bp) protein (183aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_126
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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126209..127177
DNA (969bp) protein (323aa)
L-amino acid amidase {ECO:0000313|EMBL:CDX26642.1}; EC=3.5.1.101 {ECO:0000313|EMBL:CDX26642.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
PREDICTED: uncharacterized protein LOC102335720 Tax=Pantholops hodgsonii RepID=UPI0003C181A9
proline-specific peptidase
PLM3_60_coex_sep16_scaffold_3_127
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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127174..128844
DNA (1671bp) protein (557aa)
ABC-type dipeptide transport system, periplasmic component Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KQY3_MESAW
ABC-type dipeptide transport system, periplasmic component
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:AGB46409.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
PLM3_60_coex_sep16_scaffold_3_128
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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128933..129979
DNA (1047bp) protein (349aa)
Binding-protein dependent transport system inner membrane protein Tax=Rhodospirillum rubrum F11 RepID=G2TD80_RHORU
binding-protein dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABC22977.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
PLM3_60_coex_sep16_scaffold_3_129
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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129979..130962
DNA (984bp) protein (328aa)
Binding-protein-dependent transport system inner membrane component Tax=Shinella zoogloeoides DD12 RepID=V5D1M9_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR77393.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component
PLM3_60_coex_sep16_scaffold_3_130
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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130968..131972
DNA (1005bp) protein (335aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y9K4_MESOW
peptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:AEH88730.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
PLM3_60_coex_sep16_scaffold_3_131
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131969..132991
DNA (1023bp) protein (341aa)
UPI0003CEB22D related cluster Tax=unknown RepID=UPI0003CEB22D
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY80873.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
peptide ABC transporter ATPase
PLM3_60_coex_sep16_scaffold_3_132
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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133032..133973
DNA (942bp) protein (314aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:KJB92726.1}; EC=4.3.1.12 {ECO:0000313|EMBL:KJB92726.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ornithine cyclodeaminase (EC:4.3.1.12)
ornithine cyclodeaminase Tax=Fodinicurvata sediminis RepID=UPI0003B38696
PLM3_60_coex_sep16_scaffold_3_133
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(133970..135142)
DNA (1173bp) protein (391aa)
Major facilitator superfamily transporter Tax=Oceanibaculum indicum P24 RepID=K2KGN2_9PROT
Major facilitator superfamily transporter {ECO:0000313|EMBL:EKE76490.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cyanate permease
PLM3_60_coex_sep16_scaffold_3_134
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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135262..136656
DNA (1395bp) protein (465aa)
amidase (EC:3.5.1.4)
Amidase Tax=Oceanibaculum indicum P24 RepID=K2JW65_9PROT
Amidase {ECO:0000313|EMBL:EKE78812.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
PLM3_60_coex_sep16_scaffold_3_135
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(136653..137009)
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVG2_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63895.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PLM3_60_coex_sep16_scaffold_3_136
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(137011..138024)
DNA (1014bp) protein (338aa)
Glucokinase {ECO:0000256|HAMAP-Rule:MF_00524}; EC=2.7.1.2 {ECO:0000256|HAMAP-Rule:MF_00524};; Glucose kinase {ECO:0000256|HAMAP-Rule:MF_00524}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
glk; glucokinase (EC:2.7.1.2)
hypothetical protein Tax=Limnohabitans sp. Rim47 RepID=UPI0002F8239A
PLM3_60_coex_sep16_scaffold_3_137
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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138157..139803
DNA (1647bp) protein (549aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Glucose-6-phosphate isomerase Tax=Azospirillum brasilense Sp245 RepID=G8AJG0_AZOBR
pgi; glucose-6-phosphate isomerase
PLM3_60_coex_sep16_scaffold_3_138
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(140066..141637)
DNA (1572bp) protein (524aa)
Gluconate 2-dehydrogenase flavoprotein {ECO:0000313|EMBL:CBS88962.1}; EC=1.1.99.3 {ECO:0000313|EMBL:CBS88962.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Gluconate 2-dehydrogenase flavoprotein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZBX1_AZOL4
Gluconate 2-dehydrogenase flavoprotein
PLM3_60_coex_sep16_scaffold_3_139
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(141650..142183)
DNA (534bp) protein (178aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZBX0_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:KJB94201.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3_140
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(142240..142635)
DNA (396bp) protein (132aa)
Lactoylglutathione lyase (Glyoxylase I) {ECO:0000313|EMBL:CCD03541.1}; EC=4.4.1.5 {ECO:0000313|EMBL:CCD03541.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Lactoylglutathione lyase (Glyoxylase I) Tax=Azospirillum brasilense Sp245 RepID=G8B032_AZOBR
gloA; lactoylglutathione lyase (Glyoxylase I)
PLM3_60_coex_sep16_scaffold_3_141
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142668..143015)
DNA (348bp) protein (116aa)
UPI0003CE293F related cluster Tax=unknown RepID=UPI0003CE293F
Uncharacterized protein {ECO:0000313|EMBL:CDX10972.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3_142
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143278..144249)
DNA (972bp) protein (324aa)
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
magnesium and cobalt transport protein CorA; K03284 magnesium transporter bin=bin7_NC10_sister species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
metal ion transporter
PLM3_60_coex_sep16_scaffold_3_143
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144486..145274
DNA (789bp) protein (263aa)
shikimate 5-dehydrogenase (EC:1.1.1.25)
Blr3543 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89PD9_BRADU
Blr3543 protein {ECO:0000313|EMBL:BAC48808.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
PLM3_60_coex_sep16_scaffold_3_144
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145476..145901
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Azospirillum sp. (strain B510) RepID=D3NTP0_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI71769.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM3_60_coex_sep16_scaffold_3_145
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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146363..147997
DNA (1635bp) protein (545aa)
60 kDa chaperonin Tax=alpha proteobacterium BAL199 RepID=A8U3F4_9PROT
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
groL2; 60 kDa chaperonin 2
PLM3_60_coex_sep16_scaffold_3_146
unknown

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comp(148131..148379)
DNA (249bp) protein (83aa)

This feature has no annotations

Displaying items 121-150 of 157 in total

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