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PLM3_60_coex_sep16_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 157 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3_1
unknown

Not on your lists

3..116
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_2
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(375..1190)
DNA (816bp) protein (272aa)
Transcriptional regulator Tax=Pseudomonas sp. GM79 RepID=J3I7T2_9PSED
GntR family transcriptional regulator {ECO:0000313|EMBL:KJZ62914.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
transcription regulator family protein
PLM3_60_coex_sep16_scaffold_3_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1966..2175
DNA (210bp) protein (70aa)
Putative uncharacterized protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHI4_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97902.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_60_coex_sep16_scaffold_3_4
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2215..2487
DNA (273bp) protein (91aa)
transglycosylase Tax=Janthinobacterium sp. CG3 RepID=UPI00034DB8D6
transglycosylase associated family protein
Transglycosylase associated family protein {ECO:0000313|EMBL:CDG80990.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
PLM3_60_coex_sep16_scaffold_3_trna_4
unknown

Not on your lists

comp(2625..2710)
DNA (86bp)
transferRNA Leu
PLM3_60_coex_sep16_scaffold_3_5
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2858..4039
DNA (1182bp) protein (394aa)
Uncharacterized protein Tax=Geobacter sulfurreducens RepID=D7AGI2_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY70466.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM3_60_coex_sep16_scaffold_3_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4048..4821)
DNA (774bp) protein (258aa)
Molybdopterin binding domain protein Tax=Azospirillum sp. (strain B510) RepID=D3NXN9_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KGM34240.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
molybdopterin binding domain-containing protein
PLM3_60_coex_sep16_scaffold_3_7
unknown

Not on your lists

comp(4843..5190)
DNA (348bp) protein (116aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_8
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5297..6391)
DNA (1095bp) protein (365aa)
Zinc metalloprotease Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TLH6_TISMK
zinc metalloprotease
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_3_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6586..7281
DNA (696bp) protein (232aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI00035C8BAC
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Sugar/maltose fermentation stimulation protein-like protein
PLM3_60_coex_sep16_scaffold_3_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7418..9214
DNA (1797bp) protein (599aa)
sppA; protease(signal peptide peptidase) (EC:3.4.-.-)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein Tax=Kiloniella laminariae RepID=UPI0003697013
PLM3_60_coex_sep16_scaffold_3_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9231..9992)
DNA (762bp) protein (254aa)
Hemolysin HlyA Tax=Oceanibaculum indicum P24 RepID=K2J6V1_9PROT
Hemolysin HlyA {ECO:0000313|EMBL:EKE78796.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
tlyA; hemolysin A
PLM3_60_coex_sep16_scaffold_3_12
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9989..11374)
DNA (1386bp) protein (462aa)
Putative multidrug resistance protein norM Tax=Oscillatoria sp. PCC 6506 RepID=D8G2P9_9CYAN
Putative multidrug resistance protein norM {ECO:0000313|EMBL:CBN56889.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
putative efflux protein, MATE family
PLM3_60_coex_sep16_scaffold_3_13
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11411..13333)
DNA (1923bp) protein (641aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
1-deoxy-D-xylulose-5-phosphate synthase Tax=Azospirillum brasilense Sp245 RepID=G8AP34_AZOBR
PLM3_60_coex_sep16_scaffold_3_14
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13348..14235)
DNA (888bp) protein (296aa)
Geranylgeranyl pyrophosphate synthase Tax=Magnetospirillum sp. SO-1 RepID=M3ADX4_9PROT
(2E 6E)-farnesyl diphosphate synthase {ECO:0000313|EMBL:KIL99418.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
geranylgeranyl pyrophosphate synthase
PLM3_60_coex_sep16_scaffold_3_15
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14242..14493)
DNA (252bp) protein (84aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Exodeoxyribonuclease 7 small subunit Tax=Azospirillum brasilense Sp245 RepID=G8AP32_AZOBR
exodeoxyribonuclease VII
PLM3_60_coex_sep16_scaffold_3_16
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14599..15522)
DNA (924bp) protein (308aa)
Histone deacetylase superfamily protein Tax=alpha proteobacterium BAL199 RepID=A8U2X6_9PROT
Histone deacetylase superfamily protein {ECO:0000313|EMBL:EDP61486.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
histone deacetylase superfamily protein
PLM3_60_coex_sep16_scaffold_3_17
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15759..17525
DNA (1767bp) protein (589aa)
Uncharacterized protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P923_DESSD
hypothetical protein
Tax=CG_Delta_01
PLM3_60_coex_sep16_scaffold_3_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17641..18435
DNA (795bp) protein (265aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9GJ97_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN93374.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3_60_coex_sep16_scaffold_3_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18390..19379)
DNA (990bp) protein (330aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2KJ10_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE77250.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
efflux transporter
PLM3_60_coex_sep16_scaffold_3_20
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19391..20590)
DNA (1200bp) protein (400aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TSA4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP64521.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
arabinose efflux permease family protein
PLM3_60_coex_sep16_scaffold_3_21
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(20688..21371)
DNA (684bp) protein (228aa)
hypothetical protein Tax=Fischerella muscicola RepID=UPI0002DFFC78
Uncharacterized protein {ECO:0000313|EMBL:KIF21933.1}; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3_22
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21485..22279
DNA (795bp) protein (265aa)
3'(2'),5'-bisphosphate nucleotidase Tax=Azoarcus sp. KH32C RepID=H0Q432_9RHOO
cysQ; 3'(2'),5'-bisphosphate nucleotidase
3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:BAL25871.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
PLM3_60_coex_sep16_scaffold_3_23
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22583..23578
DNA (996bp) protein (332aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Putative translation factor Tax=Oceanibaculum indicum P24 RepID=K2J2T1_9PROT
hypothetical protein
PLM3_60_coex_sep16_scaffold_3_24
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23575..24012)
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Paenibacillus RepID=F5LMR1_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EGL16325.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF7.;"
yuxK
PLM3_60_coex_sep16_scaffold_3_25
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24144..24491
DNA (348bp) protein (116aa)
Predicted protein Tax=Streptomyces sp. AA4 RepID=D9V6Y8_9ACTO
Predicted protein {ECO:0000313|EMBL:EFL05081.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
PLM3_60_coex_sep16_scaffold_3_26
unknown

Not on your lists

comp(24705..25367)
DNA (663bp) protein (221aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_27
unknown

Not on your lists

comp(26052..27185)
DNA (1134bp) protein (378aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3_28
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27548..28990
DNA (1443bp) protein (481aa)
Putative FAD-binding dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2JR28_9PROT
D-2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:EWY36019.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
2-hydroxyacid dehydrogenase
PLM3_60_coex_sep16_scaffold_3_29
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29013..30794
DNA (1782bp) protein (594aa)
Acyl-CoA dehydrogenase Tax=alpha proteobacterium BAL199 RepID=A8TVR2_9PROT
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EDP63381.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
acyl-CoA dehydrogenase
Displaying items 1-30 of 157 in total

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