ggKbase home page

PLM3_60_coex_sep16_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_123_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1202
DNA (1200bp) protein (400aa)
DNA mismatch repair protein MutL Tax=Phenylobacterium zucineum (strain HLK1) RepID=MUTL_PHEZH
mutL; DNA mismatch repair protein
DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
PLM3_60_coex_sep16_scaffold_123_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1215..2411
DNA (1197bp) protein (399aa)
MFS transporter Tax=Methylocystis rosea RepID=UPI00037D8469
major facilitator superfamily transport protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_60_coex_sep16_scaffold_123_3
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2847..4400)
DNA (1554bp) protein (518aa)
EmrB/QacA subfamily drug resistance transporter Tax=Thalassospira profundimaris WP0211 RepID=K2LTJ4_9PROT
EmrB/QacA subfamily drug resistance transporter {ECO:0000313|EMBL:EKF08267.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
emrB; multidrug resistance transporter EmrB
PLM3_60_coex_sep16_scaffold_123_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4397..5539)
DNA (1143bp) protein (381aa)
hemolysin secretion protein D Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E7B5E
Membrane protein {ECO:0000313|EMBL:KJB92524.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
protein secretion protein
PLM3_60_coex_sep16_scaffold_123_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5559..6074)
DNA (516bp) protein (172aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00036A09C6
MarR family transcriptional regulator {ECO:0000313|EMBL:EWY41765.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
MarR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_123_6
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6860..7585
DNA (726bp) protein (242aa)
Membrane protein Tax=Labrenzia RepID=U7GEB0_9RHOB
Membrane protein {ECO:0000313|EMBL:ERP95792.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
integral membrane protein
PLM3_60_coex_sep16_scaffold_123_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7691..8269)
DNA (579bp) protein (193aa)
Putative methyltransferase Tax=Azospirillum brasilense Sp245 RepID=G8AJ34_AZOBR
methyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_123_8
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(8456..9433)
DNA (978bp) protein (326aa)
agmatinase Tax=Rhizobium loti RepID=UPI00036E22DE
Arginase {ECO:0000313|EMBL:KGM42777.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
arginase/agmatinase/formiminoglutamase
PLM3_60_coex_sep16_scaffold_123_9
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9430..10461)
DNA (1032bp) protein (344aa)
Arginase/agmatinase/formimionoglutamate hydrolase, arginase family (EC:3.5.3.11)
hypothetical protein Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FCC9CF
Agmatinase, putative {ECO:0000313|EMBL:EEE35699.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium KLH11.;"
PLM3_60_coex_sep16_scaffold_123_10
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10757..11587)
DNA (831bp) protein (277aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
Pseudouridine synthase Tax=Magnetospirillum sp. SO-1 RepID=M2Z7Q5_9PROT
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase
PLM3_60_coex_sep16_scaffold_123_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11719..12321
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
NAD(P)H dehydrogenase (quinone) Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JVI6_HYPDA
flavoprotein WrbA
PLM3_60_coex_sep16_scaffold_123_12
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12316..13395)
DNA (1080bp) protein (360aa)
2-nitropropane dioxygenase family oxidoreductase Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C7W0_MYXFH
2-nitropropane dioxygenase family oxidoreductase
2-nitropropane dioxygenase family oxidoreductase {ECO:0000313|EMBL:AEI65711.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM3_60_coex_sep16_scaffold_123_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13514..13864
DNA (351bp) protein (117aa)
Transcriptional regulator Tax=Azospirillum sp. (strain B510) RepID=D3P5N9_AZOS1
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_123_14
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14032..14742)
DNA (711bp) protein (237aa)
Glutamine amidotransferase Tax=Oceanibaculum indicum P24 RepID=K2JSI1_9PROT
Glutamine amidotransferase {ECO:0000313|EMBL:EKE68075.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative gamma-Glu-GABA hydrolase
PLM3_60_coex_sep16_scaffold_123_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(14739..15662)
DNA (924bp) protein (308aa)
vitamin B12-dependent methionine synthase family protein
vitamin B12-dependent methionine synthase family protein bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Vitamin B12-dependent methionine synthase family protein {ECO:0000313|EMBL:ABC44869.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain DSM 13855 / M31).;"
PLM3_60_coex_sep16_scaffold_123_16
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15738..16268
DNA (531bp) protein (177aa)
putative cytidine and deoxycytidylate deaminase (EC:3.5.4.-)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Cytidine and deoxycytidylate deaminase, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXC0_RHOCS
PLM3_60_coex_sep16_scaffold_123_17
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16355..16849
DNA (495bp) protein (165aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. MTP4.;"
methionine-S-sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA Tax=Chthonomonas calidirosea T49 RepID=S0ESN5_9BACT
PLM3_60_coex_sep16_scaffold_123_18
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17126..18100
DNA (975bp) protein (325aa)
OmpA family protein Tax=Rhodospirillum rubrum RepID=G2T8T6_RHORU
OmpA family protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_123_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18163..18669)
DNA (507bp) protein (169aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2IX17_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE67438.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_123_20
Ruegeria sp. TM1040, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18759..21179)
DNA (2421bp) protein (807aa)
Adenylate/guanylate cyclase Tax=Ruegeria sp. (strain TM1040) RepID=Q1GD86_RUEST
guanylate cyclase
Adenylate/guanylate cyclase {ECO:0000313|EMBL:ABF65380.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. (strain TM1040) (Silicibacter sp.).;"
PLM3_60_coex_sep16_scaffold_123_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21219..22523)
DNA (1305bp) protein (435aa)
Putative oxidoreductase Tax=marine bacterium 01-004080 RepID=B1A0L3_9BACT
Putative Oxidoreductase {ECO:0000313|EMBL:KFC64671.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD dependent oxidoreductase
PLM3_60_coex_sep16_scaffold_123_22
unknown

Not on your lists

22618..23220
DNA (603bp) protein (201aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_123_23
unknown

Not on your lists

23235..23771
DNA (537bp) protein (179aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_123_24
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23783..25057)
DNA (1275bp) protein (425aa)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Phosphoribosylamine--glycine ligase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXC9_RHOCS
PLM3_60_coex_sep16_scaffold_123_25
unknown

Not on your lists

comp(25194..25406)
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_123_26
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25649..27169
DNA (1521bp) protein (507aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Exodeoxyribonuclease 7 large subunit Tax=Azospirillum brasilense Sp245 RepID=G8AJ27_AZOBR
xseA; exonuclease VII, large subunit
PLM3_60_coex_sep16_scaffold_123_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27355..28152
DNA (798bp) protein (266aa)
Peptidase M23B Tax=alpha proteobacterium BAL199 RepID=A8U3C5_9PROT
Peptidase M23B {ECO:0000313|EMBL:EDP61316.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
peptidase M23
PLM3_60_coex_sep16_scaffold_123_28
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28302..29675)
DNA (1374bp) protein (458aa)
Methyl-accepting chemotaxis protein Tax=Magnetospirillum gryphiswaldense RepID=A4TUR6_9PROT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EWY39825.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Methyl-accepting chemotaxis protein
PLM3_60_coex_sep16_scaffold_123_29
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29802..31181)
DNA (1380bp) protein (460aa)
Cytochrome c551 peroxidase Tax=Caenispirillum salinarum AK4 RepID=K9HCH6_9PROT
Cytochrome c551 peroxidase {ECO:0000313|EMBL:EKV28238.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
mauG; methylamine utilization protein mauG precursor
PLM3_60_coex_sep16_scaffold_123_30
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31365..33449
DNA (2085bp) protein (695aa)
Putative methyl-accepting chemotaxis protein Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SE80_PHAFV
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EPY02378.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
putative methyl-accepting chemotaxis protein
Displaying items 1-30 of 78 in total

View Taxonomy