ggKbase home page

PLM3_60_coex_sep16_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_220_1
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(596..1285)
DNA (690bp) protein (230aa)
Putative uncharacterized protein Tax=Vibrio harveyi 1DA3 RepID=D0XIJ8_VIBHA
hypothetical protein
Tax=BJP_IG2158_Rhodobacterales_69_12
PLM3_60_coex_sep16_scaffold_220_2
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1285..2007)
DNA (723bp) protein (241aa)
Ftsk gamma domain protein Tax=Prevotella saccharolytica F0055 RepID=L1MYB0_9BACT
HNH endonuclease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_coex_sep16_scaffold_220_3
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(2141..2932)
DNA (792bp) protein (264aa)
Putative uncharacterized protein bin=GWA2_OP3_52_12 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_220_4
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(2937..3527)
DNA (591bp) protein (197aa)
hypothetical protein bin=GWA2_Elusimicrobia_51_34 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_220_5
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

3615..3974
DNA (360bp) protein (120aa)
hypothetical protein Tax=Thiomonas sp. FB-6 RepID=UPI0003655839
addiction module toxin RelE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_220_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

3971..4294
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=Pseudomonas RepID=U8H182_PSEAI
putative transcriptional regulators
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_220_7
unknown

Not on your lists

4466..4738
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_220_8
unknown

Not on your lists

4784..5461
DNA (678bp) protein (226aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_220_9
unknown

Not on your lists

comp(6027..6503)
DNA (477bp) protein (159aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_220_10
unknown

Not on your lists

6636..6854
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_220_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

6894..7154
DNA (261bp) protein (87aa)
AbrB family transcriptional regulator Tax=Sphingobium sp. YL23 RepID=UPI0003A15532
transcriptional regulator/antitoxin MazE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_220_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7144..7551
DNA (408bp) protein (136aa)
pilus biogenesis protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B704CF
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_220_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(7823..8098)
DNA (276bp) protein (92aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1BCF9_9ZZZZ
Hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3_60_coex_sep16_scaffold_220_14
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8556..9347
DNA (792bp) protein (264aa)
hypothetical protein bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV83684.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
PLM3_60_coex_sep16_scaffold_220_15
unknown

Not on your lists

9441..9710
DNA (270bp) protein (90aa)
id=12555027 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM3_60_coex_sep16_scaffold_220_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9728..10315)
DNA (588bp) protein (196aa)
Uncharacterized protein Tax=Variovorax paradoxus (strain EPS) RepID=E6V4E4_VARPE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_220_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10337..10495)
DNA (159bp) protein (53aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_220_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10618..12009)
DNA (1392bp) protein (464aa)
Integrative genetic element Ppu40, integrase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_220_19
unknown

Not on your lists

comp(12021..12233)
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_220_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12378..13622
DNA (1245bp) protein (415aa)
Putative transcriptional regulator, XRE family Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8H6_9PROT
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CDH44015.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
putative transcriptional regulator, XRE family
PLM3_60_coex_sep16_scaffold_220_21
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13790..14128
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NT32_GRAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU37462.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
PLM3_60_coex_sep16_scaffold_220_22
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14147..16156
DNA (2010bp) protein (670aa)
Type IV secretion system, TraD, DNA-binding domain protein Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NT31_GRAMM
Type IV secretion system, TraD, DNA-binding domain protein
Type IV secretion system, TraD, DNA-binding domain protein {ECO:0000313|EMBL:AEU37461.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
PLM3_60_coex_sep16_scaffold_220_23
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16156..18933
DNA (2778bp) protein (926aa)
Conjugative relaxase domain protein Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NT30_GRAMM
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:AEU37460.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
PLM3_60_coex_sep16_scaffold_220_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(18977..20887)
DNA (1911bp) protein (637aa)
Putative Fe-S oxidoreductase Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZJD5_TERRK
Predicted Fe-S oxidoreductase {ECO:0000313|EMBL:CDM66628.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative Fe-S oxidoreductase
PLM3_60_coex_sep16_scaffold_220_25
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21555..23051
DNA (1497bp) protein (499aa)
Uncharacterized protein Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXI9_HERA2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX03403.1}; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
PLM3_60_coex_sep16_scaffold_220_26
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23057..24133
DNA (1077bp) protein (359aa)
Type III effector NopAZ Tax=Bradyrhizobium RepID=M4PUT3_BRAJP
hypothetical protein
Blr0077 protein {ECO:0000313|EMBL:BAC45342.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
PLM3_60_coex_sep16_scaffold_220_27
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24672..27593)
DNA (2922bp) protein (974aa)
ATPase (AAA+ superfamily)-like protein Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AVF2_SYNWW
ATPase (AAA+ superfamily)-like protein {ECO:0000313|EMBL:CDH46520.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
ATPase AAA
PLM3_60_coex_sep16_scaffold_220_28
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(27715..28287)
DNA (573bp) protein (191aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHG8_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB47808.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. Kolksee.;"
PLM3_60_coex_sep16_scaffold_220_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28331..31804)
DNA (3474bp) protein (1158aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHG9_ANADF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_60_coex_sep16_scaffold_220_30
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31801..33273)
DNA (1473bp) protein (491aa)
Putative uncharacterized protein Tax=Shewanella baltica OS625 RepID=G6DX95_9GAMM
Klebsiella pneumoniae SB3193 genomic scaffold, KpST82scacor00011 {ECO:0000313|EMBL:CDQ55116.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae.;"
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy