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PLM3_60_coex_sep16_scaffold_3320

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3320_1
Paenibacillus sp. FSL R7-0331, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2..550)
DNA (549bp) protein (183aa)
Epimerase Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NMK6_HALBP
phenazine biosynthesis protein
Phenazine biosynthesis protein {ECO:0000313|EMBL:AIQ53482.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-0331.;"
PLM3_60_coex_sep16_scaffold_3320_2
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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671..1324
DNA (654bp) protein (218aa)
AzlC family protein Tax=Streptomyces somaliensis RepID=UPI00029ADBCA
AzlC family protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_60_coex_sep16_scaffold_3320_3
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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1321..1629
DNA (309bp) protein (103aa)
branched-chain amino acid transport Tax=Streptomyces somaliensis RepID=UPI00029AD3C2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN04484.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
PLM3_60_coex_sep16_scaffold_3320_trna_1
unknown

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comp(1638..1708)
DNA (71bp)
transferRNA Gly
PLM3_60_coex_sep16_scaffold_3320_4
R_OP11_Roizmanbacteria_39_12b, Roizmannbacteria, Microgenomates, Bacteria

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comp(1664..2125)
DNA (462bp) protein (154aa)
Gp210 Tax=Mycobacterium phage Myrna RepID=B5LJI0_9CAUD bin=OP11_3 species=Mycobacterium phage Myrna genus=unknown taxon_order=Caudovirales taxon_class=unknown phylum=unknown tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
Tax=RIFCSPHIGHO2_01_FULL_OP11_Roizmanbacteria_39_12b_curated
PLM3_60_coex_sep16_scaffold_3320_5
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

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2491..2796
DNA (306bp) protein (102aa)
source missing description 13..101 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
type 11 methyltransferase
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3_60_coex_sep16_scaffold_3320_6
unknown

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2812..3255
DNA (444bp) protein (148aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3320_7
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3274..4365)
DNA (1092bp) protein (364aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C348_SPHTD
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM3_60_coex_sep16_scaffold_3320_8
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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4434..5087
DNA (654bp) protein (218aa)
Transcriptional regulator, TetR family Tax=Sorangium cellulosum (strain So ce56) RepID=A9GYI9_SORC5
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHY45991.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3_60_coex_sep16_scaffold_3320_9
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5133..6347)
DNA (1215bp) protein (405aa)
FAD-linked oxidase Tax=Rhizobium loti RepID=UPI000367EFD8
Putative FAD/FMN-containing dehydrogenase {ECO:0000313|EMBL:EKZ99815.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
putative FAD/FMN-containing dehydrogenase
PLM3_60_coex_sep16_scaffold_3320_10
unknown

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comp(6357..6494)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3320_11

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comp(6507..6683)
DNA (177bp) protein (59aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO02693.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_60_coex_sep16_scaffold_3320_12
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6708..7211)
DNA (504bp) protein (168aa)
Putative membrane protein Tax=Streptomyces davawensis JCM 4913 RepID=K4R6C9_9ACTO
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCK28682.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM3_60_coex_sep16_scaffold_3320_13
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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7385..7972
DNA (588bp) protein (196aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00036D2114
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK28680.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM3_60_coex_sep16_scaffold_3320_14
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7969..8205
DNA (237bp) protein (79aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003704FA1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK28679.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM3_60_coex_sep16_scaffold_3320_15
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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8217..8795
DNA (579bp) protein (193aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003642DEC
hypothetical protein
Tax=RBG_16_Actinobacteria_70_17_curated
PLM3_60_coex_sep16_scaffold_3320_16
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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8796..9023
DNA (228bp) protein (76aa)
id=24530209 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_3320_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(9029..9481)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Guillardia theta CCMP2712 RepID=L1IEH2_GUITH
sucB; dihydrolipoamide acetyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 18 items

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