ggKbase home page

PLM3_60_coex_sep16_scaffold_5350

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_5350_1
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..706)
DNA (705bp) protein (235aa)
Uncharacterized protein Tax=Geobacter sp. (strain M21) RepID=C6E442_GEOSM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_5350_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

813..2306
DNA (1494bp) protein (498aa)
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tricarballylate dehydrogenase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_5350_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2336..3610)
DNA (1275bp) protein (425aa)
Type III restriction protein res subunit bin=GWC2_Methylomirabilis_70_24 species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
type III restriction protein res subunit
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_5350_4
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

3846..4262
DNA (417bp) protein (139aa)
NUDIX hydrolase Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U668_OCEP5
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADR35941.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
PLM3_60_coex_sep16_scaffold_5350_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4267..4659)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDV9_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61459.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_60_coex_sep16_scaffold_5350_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4715..5527)
DNA (813bp) protein (271aa)
amidohydrolase 2 bin=bin7_NC10_sister species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amidohydrolase 2
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_5350_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(5551..6261)
DNA (711bp) protein (237aa)
methylated-DNA--protein-cysteine methyltransferase bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_5350_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6248..6778)
DNA (531bp) protein (177aa)
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=bin7_NC10_sister species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ECF family RNA polymerase sigma-24 subunit
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_5350_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6872..7792
DNA (921bp) protein (307aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NHL repeat family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_5350_10
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

7789..8064
DNA (276bp) protein (92aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000255|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000255|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PCD {ECO:0000255|HAMAP-Rule:MF_00434};; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=PHS_THERP
putative pterin-4-alpha-carbinolamine dehydratase
PLM3_60_coex_sep16_scaffold_5350_11
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8125..9786
DNA (1662bp) protein (554aa)
PAS/PAC sensor signal transduction histidine kinase bin=GWD2_Nitrospirae-related_57_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
multi-sensor hybrid histidine kinase
Tax=RBG_16_Gammaproteobacteria_66_13_curated
PLM3_60_coex_sep16_scaffold_5350_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9890..10537)
DNA (648bp) protein (216aa)
Soluble lytic murein transglycosylase-like protein bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transglycosylase slt domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_5350_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10894..11097
DNA (204bp) protein (68aa)
hypothetical protein Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B78235
Uncharacterized protein {ECO:0000313|EMBL:CDM66846.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
CsbD family protein
Displaying 13 items

View Taxonomy