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PLM3_60_coex_sep16_scaffold_1229

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1229_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3..221)
DNA (219bp) protein (73aa)
Binding-protein-dependent transport systems inner membrane component bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1229_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(337..1254)
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppB; dipeptide transport system permease DppB
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1229_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1251..2609)
DNA (1359bp) protein (453aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
RNA methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1229_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2682..3152
DNA (471bp) protein (157aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1229_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3149..4912
DNA (1764bp) protein (588aa)
Tetratricopeptide repeat family protein bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1229_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4887..5660
DNA (774bp) protein (258aa)
id=14627047 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1229_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5676..6593
DNA (918bp) protein (306aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1229_trna_1
unknown

Not on your lists

6613..6684
DNA (72bp)
transferRNA Gln
PLM3_60_coex_sep16_scaffold_1229_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6707..7651
DNA (945bp) protein (315aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1229_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


7667..8377
DNA (711bp) protein (237aa)
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rplY; 50S ribosomal protein L25 (General stress protein CTC)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1229_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8390..8929
DNA (540bp) protein (180aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1229_11
unknown

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9031..9126
DNA (96bp) protein (32aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1229_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9272..11563
DNA (2292bp) protein (764aa)
MutS2 protein bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MutS2 family protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1229_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11563..13437
DNA (1875bp) protein (625aa)
DNA primase (EC:2.7.7.-)
DNA primase bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1229_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13451..15214
DNA (1764bp) protein (588aa)
RNA polymerase sigma factor RpoD bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpoD; RNA polymerase sigma factor RpoD (Sigma-70)
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_1229_trna_2
unknown

Not on your lists

15231..15302
DNA (72bp)
transferRNA Met
PLM3_60_coex_sep16_scaffold_1229_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15399..16109
DNA (711bp) protein (237aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_1229_16
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16109..16498
DNA (390bp) protein (130aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
Ribonuclease H Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I5L6_DESAP
ribonuclease H
PLM3_60_coex_sep16_scaffold_1229_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16614..16937
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 19 items

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