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PLM3_60_coex_sep16_scaffold_738

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_738_1
unknown

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comp(2..364)
DNA (363bp) protein (121aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00036F25AE
PLM3_60_coex_sep16_scaffold_738_2
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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501..1715
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TPR7_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK54755.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_60_coex_sep16_scaffold_738_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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1766..2878
DNA (1113bp) protein (371aa)
putative homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Putative Homogentisate 1,2-dioxygenase {ECO:0000313|EMBL:CBK42804.1}; EC=1.13.11.5 {ECO:0000313|EMBL:CBK42804.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036EF7A9
PLM3_60_coex_sep16_scaffold_738_4
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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2959..4845
DNA (1887bp) protein (629aa)
Uncharacterized protein Tax=Amycolatopsis mediterranei RepID=G0FSJ5_AMYMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK42083.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM3_60_coex_sep16_scaffold_738_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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4933..5136
DNA (204bp) protein (68aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_738_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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5140..6093
DNA (954bp) protein (318aa)
TIGR00269 family protein Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6P1Y4_9FIRM
phosphoadenosine phosphosulfate reductase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_738_7
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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6090..6899
DNA (810bp) protein (270aa)
tRNA methyltransferase (EC:2.1.1.-)
tRNA (Adenine(58)-N(1))-methyltransferase TrmI {ECO:0000313|EMBL:CDZ86867.1}; EC=2.1.1.220 {ECO:0000313|EMBL:CDZ86867.1};; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
SAM-dependent methlyltransferase Tax=Rhodococcus RepID=UPI00029B40FF
PLM3_60_coex_sep16_scaffold_738_8
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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7166..8950
DNA (1785bp) protein (595aa)
Proteasome-associated ATPase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=ARC_THECD
AAA ATPase central domain-containing protein
Proteasome-associated ATPase {ECO:0000255|HAMAP-Rule:MF_02112}; AAA ATPase forming ring-shaped complexes {ECO:0000255|HAMAP-Rule:MF_02112}; Short=ARC {ECO:0000255|HAMAP-Rule:MF_02112};; Proteasomal ATPase {ECO:0000255|HAMAP-Rule:MF_02112}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_738_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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8986..10470
DNA (1485bp) protein (495aa)
Uncharacterized protein Tax=Frankia sp. (strain EuI1c) RepID=E3J2U9_FRASU
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_738_10
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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10559..10774
DNA (216bp) protein (72aa)
ubiquitin Tax=Nocardiopsis ganjiahuensis RepID=UPI0003477D18
hypothetical protein
Prokaryotic ubiquitin-like protein Pup {ECO:0000255|HAMAP-Rule:MF_02106}; Bacterial ubiquitin-like modifier {ECO:0000255|HAMAP-Rule:MF_02106}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM3_60_coex_sep16_scaffold_738_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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10833..11600
DNA (768bp) protein (256aa)
Putative proteasome A-type and B-type bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
20S proteasome subunits A and B
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_738_12
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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11604..12299
DNA (696bp) protein (232aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PrcA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
Proteasome subunit alpha Tax=Frankia sp. EUN1f RepID=D3CVI9_9ACTO
proteasome subunit alpha
PLM3_60_coex_sep16_scaffold_738_13
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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12296..13864
DNA (1569bp) protein (523aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_738_14
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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14006..15391
DNA (1386bp) protein (462aa)
Glycoside hydrolase 15-related Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATD7_RUBXD
glycoside hydrolase 15-like protein
Glycoside hydrolase 15-related {ECO:0000313|EMBL:ABG05341.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_738_15
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(15360..16586)
DNA (1227bp) protein (409aa)
hypothetical protein Tax=Nocardia sp. BMG111209 RepID=UPI000363D523
Uncharacterized protein {ECO:0000313|EMBL:KJF24354.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
permease-like protein
PLM3_60_coex_sep16_scaffold_738_16
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(16640..18793)
DNA (2154bp) protein (718aa)
membrane protein Tax=Frankia sp. BCU110501 RepID=UPI000374ED29
MmpL domain-containing protein
MmpL domain protein {ECO:0000313|EMBL:ABW16476.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_738_17
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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18924..20315
DNA (1392bp) protein (464aa)
Integral membrane sensor signal transduction histidine kinase Tax=Frankia sp. (strain EAN1pec) RepID=A8L686_FRASN
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABW16479.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_738_18
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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20312..20989
DNA (678bp) protein (226aa)
Two component transcriptional regulator, LuxR family Tax=Frankia sp. CN3 RepID=G6HIZ0_9ACTO
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABW16480.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_738_19
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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21061..22419
DNA (1359bp) protein (453aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
Pup--protein ligase Tax=Streptomyces violaceoniger RepID=UPI0003C75C90
proteasome component
PLM3_60_coex_sep16_scaffold_738_20
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(22403..23977)
DNA (1575bp) protein (525aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C820_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ39963.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_60_coex_sep16_scaffold_738_21
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23970..25076)
DNA (1107bp) protein (369aa)
Uncharacterized protein Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I4L9_DESAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA59796.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
PLM3_60_coex_sep16_scaffold_738_22
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(25164..25838)
DNA (675bp) protein (225aa)
Transcriptional regulator, ArsR family Tax=Paenibacillus RepID=F5LBY1_9BACL
Transcriptional regulator {ECO:0000313|EMBL:KIL39090.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
transcriptional regulatory protein
PLM3_60_coex_sep16_scaffold_738_23
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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25903..26850
DNA (948bp) protein (316aa)
Transcriptional regulator protein-like protein Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YBH8_THEBD
transcriptional regulator protein-like protein
Transcriptional regulator protein-like protein {ECO:0000313|EMBL:ADG88538.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3_60_coex_sep16_scaffold_738_24
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26847..27857
DNA (1011bp) protein (337aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RLS9_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ61525.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_60_coex_sep16_scaffold_738_25
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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27908..28273
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LU64_ACIC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK52974.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_738_26
unknown

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28225..28578
DNA (354bp) protein (118aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_738_27
BJP_IG2158_Nitrospirales_45_240, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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28627..28836
DNA (210bp) protein (70aa)
Sec-independent protein translocase protein TatA Tax=Bacteroides fragilis RepID=E4VUM9_BACFG
tatA; putative Sec-independent protein translocase component
Tax=BJP_IG2158_Nitrospirales_45_240
PLM3_60_coex_sep16_scaffold_738_28
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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28906..29682
DNA (777bp) protein (259aa)
Sec-independent protein translocase protein TatC Tax=Frankia sp. (strain EAN1pec) RepID=A8LH43_FRASN
Sec-independent protein translocase subunit TatC
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 28 items

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